Browse Element(s) Details


OsAffx.14094.1.S1_at

Description tigr:9632.m03094
TID=OsAffx.14094.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3245011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g32404OsAffx.3978.1.S1_at11/114+19242651..19247947expressed protein
LOC_Os04g32404Os.51687.1.S1_at10/114+19242651..19247947expressed protein
LOC_Os04g32420OsAffx.26285.1.S1_at10/114+19253254..19254027hypothetical protein
LOC_Os04g32430OsAffx.14093.1.S1_at10/114+19255559..19257019expressed protein
LOC_Os04g32430OsAffx.10196.1.S1_x_at1/114+19255559..19257019expressed protein
LOC_Os04g32440OsAffx.26286.1.S1_at10/114+19261277..19264187hypothetical protein
LOC_Os04g32450OsAffx.14094.1.S1_at11/114+19266088..19267232hypothetical protein
LOC_Os04g32460Os.10149.2.S1_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32460Os.10149.1.S1_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed
LOC_Os04g32460Os.10149.1.S1_x_at11/114+19266333..19270813TRANSPORT INHIBITOR RESPONSE 1 protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14094.1.S1_at--990--7471Chr04:19266198..19266222 (25 bp)
GTGGGACCCACTATTCCATTTTATA
LOC_Os04g32450
OsAffx.14094.1.S1_at--925--6071Chr04:19266227..19266251 (25 bp)
GAGTACGTACCAACCGAACGTGCTG
LOC_Os04g32450
OsAffx.14094.1.S1_at--627--1891Chr04:19266254..19266278 (25 bp)
ACGTCAACACTACAGCTATCTTGCG
LOC_Os04g32450
OsAffx.14094.1.S1_at--717--4871Chr04:19266268..19266292 (25 bp)
GCTATCTTGCGGCTCCAATTATTGA
LOC_Os04g32450
OsAffx.14094.1.S1_at--653--10411Chr04:19266389..19266413 (25 bp)
TTATTCCAGGCACTGACTGCATTCA
LOC_Os04g32450
OsAffx.14094.1.S1_at--492--5271Chr04:19266426..19266450 (25 bp)
GAAGGAAACTAATCATCGTCCCCGA
LOC_Os04g32450
OsAffx.14094.1.S1_at--434--5531Chr04:19266449..19266473 (25 bp)
GAAACGTCCCGGTCAGGAGGCTTGA
LOC_Os04g32450
OsAffx.14094.1.S1_at--157--3051Chr04:19266502..19266526 (25 bp)
AATCCGCTGTGGCAAATGTCAAAAG
LOC_Os04g32450
OsAffx.14094.1.S1_at--372--9851Chr04:19266551..19266748 (25 bp)
TACACAAGGCCAGATGCTCCGAGAT
LOC_Os04g32450
OsAffx.14094.1.S1_at--973--8571Chr04:19266767..19266791 (25 bp)
TGGTTTTTCCTGTCCCTGCAAAGGA
LOC_Os04g32450
OsAffx.14094.1.S1_at--382--10751Chr04:19266805..19266829 (25 bp)
TTGAAGAGCTTACCACTGTTGCCGC
LOC_Os04g32450
Target Sequence 
GTGGGACCCACTATTCCATTTTATACTACGAGTACGTACCAACCGAACGTGCTGCCACGTCAACACTACAGCTATCTTGC
GGCTCCAATTATTGATGCTTAGGAGAAATGTAAGTAAAAGAAGATCAAGCAAAACTGACAAAAAATATTTTCTATACTTA
ATAAAACAAGAAATGGAAGATGAAGCAGAAATTATTCCAGGCACTGACTGCATTCACAGGAGCAAAGAGAAGGAAACTAA
TCATCGTCCCCGAAACGTCCCGGTCAGGAGGCTTGAAAACAAGCATTACAACCAGCAGCAGCACAATCCGCTGTGGCAAA
TGTCAAAAGCAAATGGAAGTGGGTTCTACATATTACACAAGGCCAGATGCTCCGAGATAAGGGAGGCACACCAACGTGGT
TTTTCCTGTCCCTGCAAAGGAGAGGAGGAGACACTTGAAGAGCTTACCACTGTTGCCGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14094.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis