Browse Element(s) Details


OsAffx.14113.1.S1_s_at

Description tigr:9632.m03209
TID=OsAffx.14113.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=alkalineneutral invertase
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3349011/11alkaline/neutral invertase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33410OsAffx.30013.3.S1_x_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.3.S1_at11/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.2.S1_at4/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.1.S1_x_at3/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33410OsAffx.30013.5.S1_x_at2/114+20046043..20048220retrotransposon protein, putative, Ty1-copia subclass
LOC_Os04g33400OsAffx.14112.1.S1_at11/114+20048830..20050740F-box domain containing protein, expressed
LOC_Os04g33460Os.4179.1.S1_at1/114+20052404..200559361,4-alpha-glucan branching enzyme IIB, chloroplast precursor, putative, expressed
LOC_Os04g33470Os.16109.1.S1_at11/114+20057837..20062556calcineurin-like phosphoesterase family protein, putative, expressed
LOC_Os04g33480Os.11348.1.S1_at11/114+20065154..20068438histone deacetylase 1A, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_s_at11/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33490OsAffx.14113.1.S1_at8/114+20069030..20071908alkaline/neutral invertase, putative, expressed
LOC_Os04g33500NANA4+20072158..20075122Protein kinase domain containing protein
LOC_Os04g33510Os.5803.1.S1_at10/114+20088776..20092096expressed protein
LOC_Os04g33520Os.49614.1.S1_at11/114+20092973..20094589Root cap family protein, expressed
LOC_Os04g33530Os.50534.1.S1_at11/114+20096126..20098023Ser/Thr protein phosphatase family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0004564molecular_functionbeta-fructofuranosidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14113.1.S1_s_at--1087--611Chr04:20071104..20071128 (25 bp)
ATGCTATCCTGCTCTTGAGGATCAG
LOC_Os04g33490
OsAffx.14113.1.S1_s_at--1132--8131Chr04:20071133..20071157 (25 bp)
GGAAATTCATTACAGGGAGCGACCC
LOC_Os04g33490
OsAffx.14113.1.S1_s_at--991--8071Chr04:20071148..20071256 (25 bp)
GGAGCGACCCTAAAAATACGGCTTG
LOC_Os04g33490
OsAffx.14113.1.S1_s_at--721--2131Chr04:20071444..20071468 (25 bp)
ACAGTAGCATGTATCAAGGTGGACC
LOC_Os04g33490
OsAffx.14113.1.S1_s_at--979--3211Chr04:20071458..20071482 (25 bp)
CAAGGTGGACCGGTCAGAGATTGCA
LOC_Os04g33490
OsAffx.14113.1.S1_s_at--519--7911Chr04:20071497..20071521 (25 bp)
GGTTGCTGAGCGACGTATTGCCAAT
LOC_Os04g33490
OsAffx.14113.1.S1_s_at--396--10531Chr04:20071586..20071610 (25 bp)
TTCAGACATGGACCATTGCCGGTTT
LOC_Os04g33490
OsAffx.14113.1.S1_s_at--1030--10571Chr04:20071601..20071625 (25 bp)
TTGCCGGTTTTCTCGTGGCCAAGCA
LOC_Os04g33490
OsAffx.14113.1.S1_s_at--774--8371Chr04:20071617..20071641 (25 bp)
GGCCAAGCAGCTGTTAGAAAACCCT
LOC_Os04g33490
OsAffx.14113.1.S1_s_at--933--10571Chr04:20071682..20071706 (25 bp)
TTCTCAACGCTATGAATCGCATGAC
LOC_Os04g33490
OsAffx.14113.1.S1_s_at--1149--6831Chr04:20071782..20071806 (25 bp)
GTTTCGGCCTATCGTCATATGTGTA
LOC_Os04g33490
Target Sequence 
ATGCTATCCTGCTCTTGAGGATCAGGAGTGGAAATTCATTACAGGGAGCGACCCTAAAAATACGGCTTGGTCTTACCATA
ATGGAGGTTCCTGGCCAACACTATTGTGGCAGCTCACAGTAGCATGTATCAAGGTGGACCGGTCAGAGATTGCAGCAAAA
GCTGTGGAGGTTGCTGAGCGACGTATTGCCAATGATAAATGGCCTGAATACTACGATACCAAACGTGCACGATTCATCGG
GAAGCAGTCTCGGCTTTTTCAGACATGGACCATTGCCGGTTTTCTCGTGGCCAAGCAGCTGTTAGAAAACCCTGATAAAT
CGAGAATACTGTGGAACAACGAGGATGAGGAAATTCTCAACGCTATGAATCGCATGACTGATGCATCCAATCTGAAGAGG
CGGCGTGGCAGGAAAGGACTCAAGAAGACTTATATTGTGTAAGTCCAGAAATAGTTTCGGCCTATCGTCATATGTGTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14113.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis