Browse Element(s) Details


OsAffx.14114.1.S1_at

Description tigr:9632.m03215
TID=OsAffx.14114.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3354011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33500NANA4+20072158..20075122Protein kinase domain containing protein
LOC_Os04g33510Os.5803.1.S1_at10/114+20088776..20092096expressed protein
LOC_Os04g33520Os.49614.1.S1_at11/114+20092973..20094589Root cap family protein, expressed
LOC_Os04g33530Os.50534.1.S1_at11/114+20096126..20098023Ser/Thr protein phosphatase family protein, expressed
LOC_Os04g33540OsAffx.14114.1.S1_at11/114+20098703..20099584hypothetical protein
LOC_Os04g33540OsAffx.27050.1.S1_x_at4/114+20098703..20099584hypothetical protein
LOC_Os04g33550OsAffx.3985.1.S1_at11/114+20103502..20104006hypothetical protein
LOC_Os04g33560OsAffx.14115.1.S1_at11/114+20117176..20118793expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14114.1.S1_at--311--1531Chr04:20099042..20099066 (25 bp)
AGCAGGAAGCAGAGGCCTCGCGCCG
LOC_Os04g33540
OsAffx.14114.1.S1_at--519--5691Chr04:20099178..20099202 (25 bp)
GGCCCCGTCGCCACGCAGAGGTACG
LOC_Os04g33540
OsAffx.14114.1.S1_at--490--7231Chr04:20099444..20099468 (25 bp)
GTCGCGGCTGCTGCGAAAGAAGAAC
LOC_Os04g33540
OsAffx.14114.1.S1_at--65--4151Chr04:20099446..20099470 (25 bp)
CGCGGCTGCTGCGAAAGAAGAACAT
LOC_Os04g33540
OsAffx.14114.1.S1_at--528--831Chr04:20099469..20099493 (25 bp)
ATGGAGCAGAAGTCATGTCTTGTAG
LOC_Os04g33540
OsAffx.14114.1.S1_at--352--5051Chr04:20099474..20099498 (25 bp)
GCAGAAGTCATGTCTTGTAGTCATC
LOC_Os04g33540
OsAffx.14114.1.S1_at--712--5331Chr04:20099477..20099501 (25 bp)
GAAGTCATGTCTTGTAGTCATCTCA
LOC_Os04g33540
OsAffx.14114.1.S1_at--115--7131Chr04:20099480..20099504 (25 bp)
GTCATGTCTTGTAGTCATCTCATCG
LOC_Os04g33540
OsAffx.14114.1.S1_at--1094--751Chr04:20099483..20099507 (25 bp)
ATGTCTTGTAGTCATCTCATCGGTG
LOC_Os04g33540
OsAffx.14114.1.S1_at--425--1711Chr04:20099514..20099538 (25 bp)
ACGTTTCCGCGGAGCTCCCTTGCGT
LOC_Os04g33540
OsAffx.14114.1.S1_at--1011--4791Chr04:20099527..20099551 (25 bp)
GCTCCCTTGCGTGGTTTTCTTGGAA
LOC_Os04g33540
Target Sequence 
AGCAGGAAGCAGAGGCCTCGCGCCGCCCCCCATGTCCTCGCCAGCTGCCCCTTTCCCGCCACTCTGGCGCCGCAGGCCTC
GCCGCCTACCGCCCATCTGGCGCCGCTCACCCTCGCCGCCTGTGGCCATGGTGTTCGGCCCCGTCGCCACGCAGAGGTAC
GGCCCCGACATGACGCTGCGGGAGGCGCTGGACGGGAGGGGAGACATCTATCGGACGCTGCTGCGGGAGGCCACGGCGGC
GCTCCTCAACGCCTACTACAACGCTCCCGGCGTTGCAGCGTCGCCTCACGTCGCAGCCGCCGCCGACACTGCGCTCGCTC
GCCGACGCCGCCTCGCCCTGCCGCAACGCGGGAGCAGGAGGGCGTTAGCGGCAGGATGGTGGCTTATGGGGACATTGACG
TGGTCGCGGCTGCTGCGAAAGAAGAACATGGAGCAGAAGTCATGTCTTGTAGTCATCTCATCGGTGGCGGCGACGTTTCC
GCGGAGCTCCCTTGCGTGGTTTTCTTGGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14114.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis