Browse Element(s) Details


OsAffx.14117.1.S1_at

Description tigr:9632.m03242
TID=OsAffx.14117.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3379010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g33760Os.53796.1.S1_at11/114+20255902..20257262expressed protein
LOC_Os04g33770OsAffx.26312.1.S1_at11/114+20259479..20265096hypothetical protein
LOC_Os04g33780Os.8592.1.S1_at11/114+20270572..20275725OTU-like cysteine protease family protein, putative, expressed
LOC_Os04g33790OsAffx.14117.1.S1_at10/114+20278820..20281888hypothetical protein
LOC_Os04g33800NANA4+20283019..20287460retrotransposon protein, putative, unclassified
LOC_Os04g33810OsAffx.14118.1.S1_at10/114+20296817..20297859RNA recognition motif family protein, expressed
LOC_Os04g33820Os.6314.1.S1_at7/114+20298484..20299680F-box domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14117.1.S1_at--1092--2751Chr04:20279511..20279535 (25 bp)
AAGACGTCGGGATCGGATTCTCCGC
LOC_Os04g33790
OsAffx.14117.1.S1_at--86--3771Chr04:20279446..20279470 (25 bp)
CTCTTCGCCGCACAGGACATGGAGG
LOC_Os04g33790
OsAffx.14117.1.S1_at--1133--871Chr04:20279424..20279448 (25 bp)
AGGCCGTCGCGATCTAGCAATGGCA
LOC_Os04g33790
OsAffx.14117.1.S1_at--1126--8031Chr04:20279374..20279398 (25 bp)
GGAGCAACGACATCGACAGGACTTC
LOC_Os04g33790
OsAffx.14117.1.S1_at--1052--2111Chr04:20279359..20279383 (25 bp)
ACAGGACTTCGCCACGACGCGTAGA
LOC_Os04g33790
OsAffx.14117.1.S1_at--45--9331Chr04:20279351..20279375 (25 bp)
TCGCCACGACGCGTAGACACGGAGG
LOC_Os04g33790
OsAffx.14117.1.S1_at--983--3371Chr04:20279304..20279328 (25 bp)
CAGCGATGGGTGAATCCGTGGATCC
LOC_Os04g33790
OsAffx.14117.1.S1_at--1123--4231NONE
CCGTGGATCCCAGCATTGAGAGATT
NONE
OsAffx.14117.1.S1_at--920--9811Chr04:20278988..20279012 (25 bp)
TAACTCATGGAGCACTCCAAGCAAT
LOC_Os04g33790
OsAffx.14117.1.S1_at--481--2731Chr04:20278970..20278994 (25 bp)
AAGCAATCCATCCATGAGCTCCAGG
LOC_Os04g33790
OsAffx.14117.1.S1_at--695--2991Chr04:20278856..20278880 (25 bp)
AATGATAGCACTGCGTTTTGCCGGG
LOC_Os04g33790
Target Sequence 
AAGACGTCGGGATCGGATTCTCCGCCTTCGTGCGCGCCTACTCGCACTTCCTGGGCATCCGCTTCCTCTTCGCCGCACAG
GACATGGAGGCCGTCGCGATCTAGCAATGGCAGCGGCGGAGGTCACGAACCGAGCAAGGAGCAACGACATCGACAGGACT
TCGCCACGACGCGTAGACACGGAGGGCGCGGGGTTCTCCAGTATCTTCAGCGATGGGTGAATCCGTGGATCCCAGCATTG
AGAGATTTCAGGAAAAATAACTCATGGAGCACTCCAAGCAATCCATCCATGAGCTCCAGGAGGACGGTGGTGCAGATTCC
GGCTCCGGCTCCAAGGCTGAAGCGAAGACAGATTTGGTGGCAGGCGGGAATAAGATTCAAGAAGAAAACAATGATAGCAC
TGCGTTTTGCCGGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14117.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis