Browse Element(s) Details


OsAffx.14127.1.S1_x_at

Description tigr:9632.m03284
TID=OsAffx.14127.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g342009/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g34150OsAffx.14125.1.S1_at11/114+20511553..20511906hypothetical protein
LOC_Os04g34160OsAffx.3993.1.S1_at11/114+20515104..20516460hypothetical protein
LOC_Os04g34160OsAffx.25067.1.S1_at1/114+20515104..20516460hypothetical protein
LOC_Os04g34170Os.25734.2.S1_a_at11/114+20520646..20522441transposon protein, putative, CACTA, En/Spm sub-class, expressed
LOC_Os04g34180OsAffx.14126.1.S1_at10/114+20525809..20529890hypothetical protein
LOC_Os04g34190NANA4+20530951..20535317retrotransposon protein, putative, unclassified
LOC_Os04g34200OsAffx.14127.1.S1_at9/114+20536849..20537760hypothetical protein
LOC_Os04g34200OsAffx.14127.1.S1_x_at9/114+20536849..20537760hypothetical protein
LOC_Os04g34209NANA4+20539184..20539763NA
LOC_Os04g34220NANA4+20541428..20542663hypothetical protein
LOC_Os04g34230OsAffx.14129.1.S1_at11/114+20545911..20548551Zinc finger, C3HC4 type family protein
LOC_Os04g34240OsAffx.26320.1.S1_x_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240OsAffx.26320.1.S1_at11/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34240Os.47290.1.S1_at10/114+20552309..20553076Histone H3, putative, expressed
LOC_Os04g34250OsAffx.3994.1.S1_at11/114+20554733..20557334D-mannose binding lectin family protein, expressed
LOC_Os04g34260OsAffx.447.1.S1_at3/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260Os.46715.1.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g34260OsAffx.22947.2.S1_x_at1/114+20562333..20566883retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14127.1.S1_x_at--1077--871Chr04:20536889..20536913 (25 bp)
AGGCCAGGGGCCAGTGCCTCTCCGA
LOC_Os04g34200
OsAffx.14127.1.S1_x_at--631--551NONE
ATCCGCGCGTCGTCAGAATCCTCTT
NONE
OsAffx.14127.1.S1_x_at--422--4571NONE
GCGCGTCGTCAGAATCCTCTTACGA
NONE
OsAffx.14127.1.S1_x_at--560--4651Chr04:20537483..20537648 (25 bp)
GCGTCGTCAGAATCCTCTTACGAAA
LOC_Os04g34200
OsAffx.14127.1.S1_x_at--1029--7191Chr04:20537631..20537650 (20 bp)
GTCGTCAGAATCCTCTTACGAAAAT
LOC_Os04g34200
OsAffx.14127.1.S1_x_at--76--7111Chr04:20537631..20537653 (23 bp)
GTCAGAATCCTCTTACGAAAATGTT
LOC_Os04g34200
OsAffx.14127.1.S1_x_at--829--1231Chr04:20537632..20537656 (25 bp)
AGAATCCTCTTACGAAAATGTTGGT
LOC_Os04g34200
OsAffx.14127.1.S1_x_at--95--5271Chr04:20537633..20537657 (25 bp)
GAATCCTCTTACGAAAATGTTGGTG
LOC_Os04g34200
OsAffx.14127.1.S1_x_at--118--2991Chr04:20537648..20537672 (25 bp)
AATGTTGGTGGGTGTTCCAGGAAAT
LOC_Os04g34200
OsAffx.14127.1.S1_x_at--1005--2491Chr04:20537676..20537700 (25 bp)
AACAGGAACATTCTTTGCAGATGGA
LOC_Os04g34200
OsAffx.14127.1.S1_x_at--494--6011Chr04:20537699..20537723 (25 bp)
GAGATGGAATTGGTAAAACCTTCTT
LOC_Os04g34200
Target Sequence 
AGGCCAGGGGCCAGTGCCTCTCCGATCCGCGCGTCGTCAGAATCCTCTTACGAAAATGTTGGTGGGTGTTCCAGGAAATA
TCAACAGGAACATTCTTTGCAGATGGAGATGGAATTGGTAAAACCTTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14127.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis