Browse Element(s) Details


OsAffx.14151.2.S1_s_at

Description tigr:9632.m03401
TID=OsAffx.14151.2
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3534011/11BTB/POZ domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35300Os.9083.1.S1_at10/114+21279120..21281231expressed protein
LOC_Os04g35310OsAffx.14150.1.S1_at11/114+21285733..21287045BTB/POZ domain containing protein
LOC_Os04g35320NANA4+21292781..21295790retrotransposon protein, putative, unclassified
LOC_Os04g35330NANA4+21296417..21302573retrotransposon protein, putative, unclassified
LOC_Os04g35340OsAffx.14151.2.S1_s_at11/114+21304417..21305446BTB/POZ domain containing protein
LOC_Os04g35350OsAffx.14152.1.S1_at10/114+21306334..21310769expressed protein
LOC_Os04g35359Os.52651.1.A1_at1/114+21314809..21315681NA
LOC_Os04g35370OsAffx.26342.1.S1_at11/114+21318769..21319884BTB/POZ domain containing protein, expressed
LOC_Os04g35380Os.18430.1.S1_at11/114+21326088..21331515expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14151.2.S1_s_at--220--6191Chr04:21304977..21305001 (25 bp)
GAGGACATCGACGTAGACACCGCAA
LOC_Os04g35340
OsAffx.14151.2.S1_s_at--204--5051Chr04:21304782..21304806 (25 bp)
GCAGAGCTTTTTGGGCCAAGCAAGG
LOC_Os04g35340
OsAffx.14151.2.S1_s_at--685--2731Chr04:21304765..21304789 (25 bp)
AAGCAAGGAGCTGGGTGCCACGACC
LOC_Os04g35340
OsAffx.14151.2.S1_s_at--116--3831Chr04:21304650..21304674 (25 bp)
CTGCCGGAGCCAGAGACGACGAAAG
LOC_Os04g35340
OsAffx.14151.2.S1_s_at--225--3871Chr04:21304557..21304581 (25 bp)
CTGAGGCTGGTGTGCGAGCACAAAC
LOC_Os04g35340
OsAffx.14151.2.S1_s_at--520--1491Chr04:21304541..21304565 (25 bp)
AGCACAAACTGTGCGAGTACGTGAA
LOC_Os04g35340
OsAffx.14151.2.S1_s_at--780--7911Chr04:21304507..21304531 (25 bp)
GGTTGTTTCCATGCTTGCATTCGCC
LOC_Os04g35340
OsAffx.14151.2.S1_s_at--5--91Chr04:21304489..21304513 (25 bp)
ATTCGCCCGGGAGCACCATTGCGAT
LOC_Os04g35340
OsAffx.14151.2.S1_s_at--759--5931Chr04:21304479..21304503 (25 bp)
GAGCACCATTGCGATGGCCTCAAGG
LOC_Os04g35340
OsAffx.14151.2.S1_s_at--996--8031Chr04:21304456..21304480 (25 bp)
GGAGAAGTGCTTGCGTTTCCTCGAC
LOC_Os04g35340
OsAffx.14151.2.S1_s_at--520--2851Chr04:21304452..21304476 (25 bp)
AAGTGCTTGCGTTTCCTCGACGATC
LOC_Os04g35340
Target Sequence 
GAGGACATCGACGTAGACACCGCAACGCCGCCGCCGCCGCCGCCGCCTACGGTGGTGGTCCCACCGTCGGACCTGCACCG
GCACCTCGGAGGCCTCCTCGCCACCGGGGAGGGCGCCGACGTGACGTTCGAGGTCAGCGGGAAGACGTTCGCGGCACACA
GGCTGGTGCTCGCGGCCCGGTCTCCGGTGTTCCGTGCAGAGCTTTTTGGGCCAAGCAAGGAGCTGGGTGCCACGACCGGC
GGCGCGGTGGATCACACCGCCATACGCATCGACGACATGGAGGCGCGGGACTTCGAGGCTCTGCTCCGCTACATGTACAC
CGACTCGCTGCCGGAGCCAGAGACGACGAAAGGAGGAGGGGACGCGGCGGCGATGCTCCCGGACCTGGTCGCGGCGGCGA
GCAGGTACAAGATGGAGAGGCTGAGGCTGGTGTGCGAGCACAAACTGTGCGAGTACGTGAACGGGAGAACGGTTGTTTCC
ATGCTTGCATTCGCCCGGGAGCACCATTGCGATGGCCTCAAGGAGAAGTGCTTGCGTTTCCTCGACGATC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14151.2.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis