Browse Element(s) Details


OsAffx.26342.1.S1_at

Description tigr:9632.m03404
TID=OsAffx.26342.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=BTBPOZ domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3537011/11BTB/POZ domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35320NANA4+21292781..21295790retrotransposon protein, putative, unclassified
LOC_Os04g35330NANA4+21296417..21302573retrotransposon protein, putative, unclassified
LOC_Os04g35340OsAffx.14151.2.S1_s_at11/114+21304417..21305446BTB/POZ domain containing protein
LOC_Os04g35350OsAffx.14152.1.S1_at10/114+21306334..21310769expressed protein
LOC_Os04g35359Os.52651.1.A1_at1/114+21314809..21315681NA
LOC_Os04g35370OsAffx.26342.1.S1_at11/114+21318769..21319884BTB/POZ domain containing protein, expressed
LOC_Os04g35380Os.18430.1.S1_at11/114+21326088..21331515expressed protein
LOC_Os04g35390OsAffx.14153.1.S1_at9/114+21338148..21339315hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26342.1.S1_at--243--8271Chr04:21319341..21319365 (25 bp)
GGCAGGCGGGTAACCCTGCCACCGT
LOC_Os04g35370
OsAffx.26342.1.S1_at--553--3231Chr04:21319243..21319267 (25 bp)
CAAGACGTTCTTGGCGCATCGGAAT
LOC_Os04g35370
OsAffx.26342.1.S1_at--868--10551Chr04:21319236..21319260 (25 bp)
TTCTTGGCGCATCGGAATGTGCTCG
LOC_Os04g35370
OsAffx.26342.1.S1_at--900--491Chr04:21319226..21319250 (25 bp)
ATCGGAATGTGCTCGCGGCCCGATC
LOC_Os04g35370
OsAffx.26342.1.S1_at--427--4351Chr04:21319200..21319224 (25 bp)
CCAGTGTTCCACCAAGAGCTTTTCT
LOC_Os04g35370
OsAffx.26342.1.S1_at--262--3111Chr04:21319188..21319212 (25 bp)
CAAGAGCTTTTCTCCCTAACGGAGA
LOC_Os04g35370
OsAffx.26342.1.S1_at--965--3911Chr04:21319148..21319172 (25 bp)
CTGGCGGTGCCGGTGTCATCATACG
LOC_Os04g35370
OsAffx.26342.1.S1_at--15--7291Chr04:21319142..21319166 (25 bp)
GTGCCGGTGTCATCATACGCGTCGA
LOC_Os04g35370
OsAffx.26342.1.S1_at--449--7751Chr04:21319137..21319161 (25 bp)
GGTGTCATCATACGCGTCGACGACA
LOC_Os04g35370
OsAffx.26342.1.S1_at--1047--1531Chr04:21318812..21318836 (25 bp)
AGCATCTGACGAAAAGCTACCCCTT
LOC_Os04g35370
OsAffx.26342.1.S1_at--788--9431Chr04:21318808..21318832 (25 bp)
TCTGACGAAAAGCTACCCCTTTGTT
LOC_Os04g35370
Target Sequence 
GGCAGGCGGGTAACCCTGCCACCGTCGGACCTGGCCCGGCACCTCGGCGGCCTCCTCGCCACCGGAGTGGGCGCCGACGT
GACGTTCGAGGTCGACGGCAAGACGTTCTTGGCGCATCGGAATGTGCTCGCGGCCCGATCCCCAGTGTTCCACCAAGAGC
TTTTCTCCCTAACGGAGAAGGGGAATGCCGCGACTGGCGGTGCCGGTGTCATCATACGCGTCGACGACATGGAGGCGCAG
GACTTCGAGGCTCTGCTCCACTTCATATACACCGACTCGTTGCCGGAGATGAAAGGTGGAGACGCAGTGGCGATGCTCCC
AGACCTGGTCGCGGCGGCTAACAGGTATAAGATGGAGAGACTAAGGTTGGTCTGTGAAGATAAGCTATGTGAGTATGTAA
CTGTGAGAACCGTGGCAGCCATGTTGGCGTTTGCTGGGGAACACCAATGCCCCGAGCTTGAGAAGAAGTGCTTGCAGCTA
CTCGAAGATCCAGCAAATTTGAGGAACATCGTGGAGACTGAAGGTCTTGAGCATCTGACGAAAAGCTACCCCTTTGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis