Browse Element(s) Details


OsAffx.14153.1.S1_at

Description tigr:9632.m03406
TID=OsAffx.14153.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g353909/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35359Os.52651.1.A1_at1/114+21314809..21315681NA
LOC_Os04g35370OsAffx.26342.1.S1_at11/114+21318769..21319884BTB/POZ domain containing protein, expressed
LOC_Os04g35380Os.18430.1.S1_at11/114+21326088..21331515expressed protein
LOC_Os04g35390OsAffx.14153.1.S1_at9/114+21338148..21339315hypothetical protein
LOC_Os04g35410Os.5396.1.S1_a_at11/114+21352075..21356188expressed protein
LOC_Os04g35420OsAffx.14155.1.S1_at11/114+21359653..21370933ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g35420Os.18695.1.S1_at1/114+21359653..21370933ATP-dependent DNA helicase, RecQ family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14153.1.S1_at--130--4651Chr04:21338488..21338512 (25 bp)
GCGGGAAGGTCTACTCCACGCCGCT
LOC_Os04g35390
OsAffx.14153.1.S1_at--768--7611Chr04:21338490..21338514 (25 bp)
GGGAAGGTCTACTCCACGCCGCTGC
LOC_Os04g35390
OsAffx.14153.1.S1_at--381--9311Chr04:21338526..21338550 (25 bp)
TCCCTCCTCTCCAGCAAGGTGGTGG
LOC_Os04g35390
OsAffx.14153.1.S1_at--171--8951Chr04:21338698..21338722 (25 bp)
TGACGGACTGGCTCGCCGTGCTGAG
LOC_Os04g35390
OsAffx.14153.1.S1_at--450--7291Chr04:21338715..21338739 (25 bp)
GTGCTGAGCCTGTACCGGTCGTGCA
LOC_Os04g35390
OsAffx.14153.1.S1_at--354--1671Chr04:21338721..21338745 (25 bp)
AGCCTGTACCGGTCGTGCACGAGGT
LOC_Os04g35390
OsAffx.14153.1.S1_at--685--9931NONE
TACCGGTCGTGCACGAGGTTTTTAG
NONE
OsAffx.14153.1.S1_at--929--7191NONE
GTCGTGCACGAGGTTTTTAGAAGTT
NONE
OsAffx.14153.1.S1_at--115--5091Chr04:21338737..21339254 (25 bp)
GCACGAGGTTTTTAGAAGTTGTAGT
LOC_Os04g35390
OsAffx.14153.1.S1_at--312--2811Chr04:21339245..21339269 (25 bp)
AAGTTGTAGTTGTAGAAGCCAAGAG
LOC_Os04g35390
OsAffx.14153.1.S1_at--1061--9991Chr04:21339257..21339281 (25 bp)
TAGAAGCCAAGAGTTGGGTTTTCCG
LOC_Os04g35390
Target Sequence 
GCGGGAAGGTCTACTCCACGCCGCTGCCCCTCCCGCCGTCCCTCCTCTCCAGCAAGGTGGTGGTCGCCGACGAAGACCGC
GGCGGCGCCGACCGCCTCGCCGTCTCCGACGACGACGACGACGCGAAGGCCGCGAGGAGGAGGAGTCGGCGGCGGCATAG
GCGGAGGCTGCTGCAGCGGCCGCGGCGGCCGGCGGCGCTGGCCGCCGCCCTGACGGACTGGCTCGCCGTGCTGAGCCTGT
ACCGGTCGTGCACGAGGTTTTTAGAAGTTGTAGTTGTAGAAGCCAAGAGTTGGGTTTTCCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14153.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis