Browse Element(s) Details


OsAffx.14155.1.S1_at

Description tigr:9632.m03409
TID=OsAffx.14155.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ATP-dependent DNA helicase, RecQ family, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3542011/11ATP-dependent DNA helicase, RecQ family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35390OsAffx.14153.1.S1_at9/114+21338148..21339315hypothetical protein
LOC_Os04g35410Os.5396.1.S1_a_at11/114+21352075..21356188expressed protein
LOC_Os04g35420OsAffx.14155.1.S1_at11/114+21359653..21370933ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g35420Os.18695.1.S1_at1/114+21359653..21370933ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g35430OsAffx.14156.1.S1_at11/114+21372010..21378606PHD-finger family protein, expressed
LOC_Os04g35440NANA4+21382935..21384839retrotransposon protein, putative, unclassified
LOC_Os04g35450NANA4+21388350..21391049retrotransposon protein, putative, unclassified
LOC_Os04g35460NANA4+21391868..21394010retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0000724biological_processdouble-strand break repair via homologous recombination
GO:0006974biological_processresponse to DNA damage stimulus
GO:0003678molecular_functionDNA helicase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0008026molecular_functionATP-dependent helicase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14155.1.S1_at--182--1691Chr04:21360674..21360698 (25 bp)
AGCCTTGCAGCCGAGCTTTATGAAG
LOC_Os04g35420
OsAffx.14155.1.S1_at--784--5391Chr04:21360653..21360677 (25 bp)
GAAGCTTTGCAATGCCTTAGGACTC
LOC_Os04g35420
OsAffx.14155.1.S1_at--291--3991Chr04:21360305..21360329 (25 bp)
CGTGTGCTTGCAACCATAGAGGATT
LOC_Os04g35420
OsAffx.14155.1.S1_at--356--6531Chr04:21360284..21360308 (25 bp)
GATTTCCTCGCCAGATATCCAAATG
LOC_Os04g35420
OsAffx.14155.1.S1_at--948--5151Chr04:21360232..21360256 (25 bp)
GCAACGAGCACAGCGAGGCGGTCAA
LOC_Os04g35420
OsAffx.14155.1.S1_at--722--1731Chr04:21360179..21360203 (25 bp)
ACCTCTACCAACTGTGACGACTTTG
LOC_Os04g35420
OsAffx.14155.1.S1_at--281--10231Chr04:21360158..21360182 (25 bp)
TTTGAGGAACGCACGGTCCAGTCCA
LOC_Os04g35420
OsAffx.14155.1.S1_at--628--7271Chr04:21360143..21360167 (25 bp)
GTCCAGTCCAAGAAACGCGCTGCAA
LOC_Os04g35420
OsAffx.14155.1.S1_at--88--631Chr04:21360091..21360115 (25 bp)
ATGCTGCCAGCATCGTCCAGGACGT
LOC_Os04g35420
OsAffx.14155.1.S1_at--145--971Chr04:21360073..21360097 (25 bp)
AGGACGTCCGCTACATAGATCTTGA
LOC_Os04g35420
OsAffx.14155.1.S1_at--299--2351Chr04:21360003..21360027 (25 bp)
AAAGCCTGTGGCTTCTGGTAGGGTT
LOC_Os04g35420
Target Sequence 
AGCCTTGCAGCCGAGCTTTATGAAGCTTTGCAATGCCTTAGGACTCAGATAATGGATGAAAATCCACAATTATTGGCATA
CCACATATTTAAAAACGAGACATTGAAGGAAATCAGCAACCGAATGCCAAGAACGAAAGAGGAACTTGTGGAGATAAATG
GCATCGGCAAGAACAAGCTGAACAAGTACGGGGACCGTGTGCTTGCAACCATAGAGGATTTCCTCGCCAGATATCCAAAT
GCGACCAGGAAAACCAGCAGCGGCGGCAGCAACGAGCACAGCGAGGCGGTCAAGAAGCGAAGAGGCTTCTCCGTCACCAA
CACCTCTACCAACTGTGACGACTTTGAGGAACGCACGGTCCAGTCCAAGAAACGCGCTGCAAAGACACGTACAAGGCAGG
AAATATCTGATGCTGCCAGCATCGTCCAGGACGTCCGCTACATAGATCTTGAGCTAGATGGTTGTGAACAAGTCAATGAA
GTGCCATACAGTGTACAAAAGCCTGTGGCTTCTGGTAGGGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14155.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis