Browse Element(s) Details


OsAffx.14156.1.S1_at

Description tigr:9632.m03410
TID=OsAffx.14156.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=PHD-finger, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3543011/11PHD-finger family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35410Os.5396.1.S1_a_at11/114+21352075..21356188expressed protein
LOC_Os04g35420OsAffx.14155.1.S1_at11/114+21359653..21370933ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g35420Os.18695.1.S1_at1/114+21359653..21370933ATP-dependent DNA helicase, RecQ family protein, expressed
LOC_Os04g35430OsAffx.14156.1.S1_at11/114+21372010..21378606PHD-finger family protein, expressed
LOC_Os04g35440NANA4+21382935..21384839retrotransposon protein, putative, unclassified
LOC_Os04g35450NANA4+21388350..21391049retrotransposon protein, putative, unclassified
LOC_Os04g35460NANA4+21391868..21394010retrotransposon protein, putative, unclassified
LOC_Os04g35470NANA4+21396433..21398027retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
GO:0006355biological_processregulation of transcription, DNA-dependent
GO:0005634cellular_componentnucleus
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14156.1.S1_at--755--6431Chr04:21373504..21373528 (25 bp)
GATCATTTCTGTGGCATCCATCAGG
LOC_Os04g35430
OsAffx.14156.1.S1_at--628--6351Chr04:21373330..21373354 (25 bp)
GATGCCTCTAATAGCTACTTGCCTT
LOC_Os04g35430
OsAffx.14156.1.S1_at--760--7331Chr04:21373285..21373309 (25 bp)
GTGCAGGCGTCTCATGGATTACATT
LOC_Os04g35430
OsAffx.14156.1.S1_at--651--1351Chr04:21372535..21372559 (25 bp)
AGAGATGCTTCTTCTATCCGCGATA
LOC_Os04g35430
OsAffx.14156.1.S1_at--446--311Chr04:21372513..21372537 (25 bp)
ATACCTAGCCTAGTCGACACATGGA
LOC_Os04g35430
OsAffx.14156.1.S1_at--1142--7871Chr04:21372476..21372500 (25 bp)
GGTTCGTACCGATAGACGACCTCGA
LOC_Os04g35430
OsAffx.14156.1.S1_at--100--951Chr04:21372393..21372417 (25 bp)
AGGAACCTGTACGAGTGTCCGGGCA
LOC_Os04g35430
OsAffx.14156.1.S1_at--36--3211Chr04:21372226..21372250 (25 bp)
CAAGGAGAATCTCGCGTTCGTCGAT
LOC_Os04g35430
OsAffx.14156.1.S1_at--1140--1291Chr04:21372164..21372188 (25 bp)
AGAGGCCGTTTGAGGATCGCTCGCC
LOC_Os04g35430
OsAffx.14156.1.S1_at--118--91Chr04:21372086..21372110 (25 bp)
ATTCGTCCTGTGAAAATCGTCGTCG
LOC_Os04g35430
OsAffx.14156.1.S1_at--734--3031Chr04:21372072..21372096 (25 bp)
AATCGTCGTCGTCTTGGCAAAACTA
LOC_Os04g35430
Target Sequence 
GATCATTTCTGTGGCATCCATCAGGTTACATGGTACAGTTGTGGCGGAGATGCCTCTAATAGCTACTTGCCTTGAGAATC
GTCAACAAGGGATGTGCAGGCGTCTCATGGATTACATTGAACAGATGCTGAAATCTCTGAAGGTAGAGATGCTTCTTCTA
TCCGCGATACCTAGCCTAGTCGACACATGGACGATGGCGTTCGGGTTCGTACCGATAGACGACCTCGACAGGAAGAATCT
CAGCAGGCTGAGGCTGGTGTCGGTCCCGGGGACCGTTCTACTGAAGAGGAACCTGTACGAGTGTCCGGGCACCAATGCGG
CGGGTGGTGGTGGTGGTGGTGGTGGTAGCAAGGAGAATCTCGCGTTCGTCGATCGGTCGGTGGCGGTGACGGCTGCGGAT
GCTGGACAGCAGAGGCCGTTTGAGGATCGCTCGCCGGTTTCTTGTGCAGTGGACAGCCTCGCCGACGAGCTGCGGAGTTT
GAAGATCAATTCGTCCTGTGAAAATCGTCGTCGTCTTGGCAAAACTA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14156.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis