Browse Element(s) Details


Os.18430.1.S1_at

Description gb:AK067758.1
DB_XREF= gi:32977776
TID=Os.18430.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.18430 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013117O04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013117O04, full insert sequence.
FL= gb:AK067758.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3538011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35330NANA4+21296417..21302573retrotransposon protein, putative, unclassified
LOC_Os04g35340OsAffx.14151.2.S1_s_at11/114+21304417..21305446BTB/POZ domain containing protein
LOC_Os04g35350OsAffx.14152.1.S1_at10/114+21306334..21310769expressed protein
LOC_Os04g35359Os.52651.1.A1_at1/114+21314809..21315681NA
LOC_Os04g35370OsAffx.26342.1.S1_at11/114+21318769..21319884BTB/POZ domain containing protein, expressed
LOC_Os04g35380Os.18430.1.S1_at11/114+21326088..21331515expressed protein
LOC_Os04g35390OsAffx.14153.1.S1_at9/114+21338148..21339315hypothetical protein
LOC_Os04g35410Os.5396.1.S1_a_at11/114+21352075..21356188expressed protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18430.1.S1_at--798--5191Chr04:21330676..21330700 (25 bp)
GCAATTCTACATCCAGTCCTTTTCT
LOC_Os04g35380
Os.18430.1.S1_at--749--3671Chr04:21330747..21330771 (25 bp)
CTTTGTTCCCTTCCATCTAATAATA
LOC_Os04g35380
Os.18430.1.S1_at--936--10191Chr04:21330770..21330794 (25 bp)
TATTTCCCATCCAACATATTCTGAG
LOC_Os04g35380
Os.18430.1.S1_at--531--31Chr04:21330828..21330852 (25 bp)
ATTGACTGCTGCAGGTACCCAAGCA
LOC_Os04g35380
Os.18430.1.S1_at--255--6431Chr04:21330865..21330889 (25 bp)
GATCAACTGAAACCTTCGCATGGAG
LOC_Os04g35380
Os.18430.1.S1_at--567--3871Chr04:21330908..21330932 (25 bp)
CTGTTTTCTTCATAGCTAAGCGACT
LOC_Os04g35380
Os.18430.1.S1_at--847--4591Chr04:21330927..21331331 (25 bp)
GCGACTAACGACTCAAGTGCTGCAA
LOC_Os04g35380
Os.18430.1.S1_at--343--7311Chr04:21331323..21331347 (25 bp)
GTGCTGCAATTGTTTCCAGAGGTAC
LOC_Os04g35380
Os.18430.1.S1_at--137--2391Chr04:21331388..21331412 (25 bp)
AAACAAACGCTGTGCTGGGCTTTAT
LOC_Os04g35380
Os.18430.1.S1_at--710--8651Chr04:21331403..21331427 (25 bp)
TGGGCTTTATCACAGTGCTGCTGTT
LOC_Os04g35380
Os.18430.1.S1_at--222--2571Chr04:21331465..21331489 (25 bp)
AACTGTAAATATTCCGCCATTGCGA
LOC_Os04g35380
Target Sequence 
GCAATTCTACATCCAGTCCTTTTCTCCACCGAAACTGGTGTGGAAACTGGATGAGAAAAAACAGTATCTTCCTTTGTTCC
CTTCCATCTAATAATATTTCCCATCCAACATATTCTGAGTGCAGTTATGCAATGTTGTCTGTTGCAGTTTGTATTGACTG
CTGCAGGTACCCAAGCAGAAAAAGTAATTGATCAACTGAAACCTTCGCATGGAGGGAAACTGCAGAGAATACCTGTTTTC
TTCATAGCTAAGCGACTAACGACTCAAGTGCTGCAATTGTTTCCAGAGGTACNCAAAGAACAATGAAAGGATCCACATAA
CCATANCAAAGGAAACAAACGCTGTGCTGGGCTTTATCACAGTGCTGCTGTTGAANTTACACCCGAAGGGTGTATAACCA
GAACTGTAAAACTGTAAATATTCCGCCATTGCGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18430.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis