Browse Element(s) Details


OsAffx.14152.1.S1_at

Description tigr:9632.m03402
TID=OsAffx.14152.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g3535010/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g35310OsAffx.14150.1.S1_at11/114+21285733..21287045BTB/POZ domain containing protein
LOC_Os04g35320NANA4+21292781..21295790retrotransposon protein, putative, unclassified
LOC_Os04g35330NANA4+21296417..21302573retrotransposon protein, putative, unclassified
LOC_Os04g35340OsAffx.14151.2.S1_s_at11/114+21304417..21305446BTB/POZ domain containing protein
LOC_Os04g35350OsAffx.14152.1.S1_at10/114+21306334..21310769expressed protein
LOC_Os04g35359Os.52651.1.A1_at1/114+21314809..21315681NA
LOC_Os04g35370OsAffx.26342.1.S1_at11/114+21318769..21319884BTB/POZ domain containing protein, expressed
LOC_Os04g35380Os.18430.1.S1_at11/114+21326088..21331515expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14152.1.S1_at--1143--9991Chr04:21306988..21307012 (25 bp)
TAGCTCACATGGATACACGCCTGCA
LOC_Os04g35350
OsAffx.14152.1.S1_at--748--6471Chr04:21306999..21307023 (25 bp)
GATACACGCCTGCAAGTAATCCAAG
LOC_Os04g35350
OsAffx.14152.1.S1_at--1078--931Chr04:21307022..21307046 (25 bp)
AGGAATCTGGGAACCTCTGCAGGTC
LOC_Os04g35350
OsAffx.14152.1.S1_at--295--9472Chr04:21307037..21307061 (25 bp)
TCTGCAGGTCTGCAATCCTTTGCTC
LOC_Os04g35350
OsAffx.14152.1.S1_at--770--3171Chr04:21307049..21307073 (25 bp)
CAATCCTTTGCTCCCGACAACGGGT
LOC_Os04g35350
OsAffx.14152.1.S1_at--372--9571Chr04:21307077..21307101 (25 bp)
TCTTCCTCCTTTGGTCAGGGCAAAA
LOC_Os04g35350
OsAffx.14152.1.S1_at--149--5151Chr04:21307096..21307120 (25 bp)
GCAAAAACTTGGGAACTCACTGAGA
LOC_Os04g35350
OsAffx.14152.1.S1_at--535--9751NONE
TAATAATACAGTGCTTATTGTCGCG
NONE
OsAffx.14152.1.S1_at--367--3891Chr04:21310685..21310709 (25 bp)
CTGTGCCTGTACATGTCAGCTAAGG
LOC_Os04g35350
OsAffx.14152.1.S1_at--642--7091Chr04:21310699..21310723 (25 bp)
GTCAGCTAAGGTATAACAATTGGCC
LOC_Os04g35350
OsAffx.14152.1.S1_at--1130--9811Chr04:21310712..21310736 (25 bp)
TAACAATTGGCCTCTGATTTCACCG
LOC_Os04g35350
Target Sequence 
TAGCTCACATGGATACACGCCTGCAAGTAATCCAAGGAATCTGGGAACCTCTGCAGGTCTGCAATCCTTTGCTCCCGACA
ACGGGTTCCTCTTCCTCCTTTGGTCAGGGCAAAAACTTGGGAACTCACTGAGAATGAGTATAATAATACAGTGCTTATTG
TCGCGGTCAGGTCCGTGCGATACGTTTGTTGCTGTTGTGCTGCTGTTCCCTTTACCATCAGCTCCTGTTCAGGTTGCGGA
CCGCATCTTCTGTGCCTGTACATGTCAGCTAAGGTATAACAATTGGCCTCTGATTTCACCG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14152.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis