Browse Element(s) Details


OsAffx.14248.1.S1_at

Description tigr:9632.m04112
TID=OsAffx.14248.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4297011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g42920Os.27539.1.A1_at11/114+25170554..25176317Isocitrate dehydrogenase, chloroplast precursor, putative, expressed
LOC_Os04g42930Os.3372.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42930OsAffx.26436.1.S1_at11/114+25177844..25180732Glutaredoxin, putative, expressed
LOC_Os04g42940OsAffx.4066.1.S1_at11/114+25181161..25182428expressed protein
LOC_Os04g42950Os.56210.1.S1_at11/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42950Os.57514.1.S1_x_at1/114+25186030..25188593Myb protein, putative, expressed
LOC_Os04g42960Os.50332.1.S1_at11/114+25197992..25199617Lung seven transmembrane receptor family protein, expressed
LOC_Os04g42970OsAffx.14248.1.S1_at11/114+25201206..25201820hypothetical protein
LOC_Os04g42980Os.52137.1.S1_at11/114+25204973..25210172zinc finger family protein, putative, expressed
LOC_Os04g42990OsAffx.14249.1.S1_at9/114+25213102..25219840Ssl1-like family protein, expressed
LOC_Os04g42990Os.50619.1.S1_x_at1/114+25213102..25219840Ssl1-like family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14248.1.S1_at--417--7651Chr04:25201259..25201283 (25 bp)
GGGAGTAGCAGCCGCTCTCATCGCC
LOC_Os04g42970
OsAffx.14248.1.S1_at--85--6731Chr04:25201292..25201316 (25 bp)
GTTCTGCCTCTTCATCGCTTTGGTC
LOC_Os04g42970
OsAffx.14248.1.S1_at--1090--10531Chr04:25201302..25201326 (25 bp)
TTCATCGCTTTGGTCCTCCAGTCGA
LOC_Os04g42970
OsAffx.14248.1.S1_at--1063--9351Chr04:25201428..25201452 (25 bp)
TCGAACGACCTGCTGCATATCGGGA
LOC_Os04g42970
OsAffx.14248.1.S1_at--634--5451Chr04:25201430..25201454 (25 bp)
GAACGACCTGCTGCATATCGGGACG
LOC_Os04g42970
OsAffx.14248.1.S1_at--898--1751Chr04:25201435..25201459 (25 bp)
ACCTGCTGCATATCGGGACGCTCTT
LOC_Os04g42970
OsAffx.14248.1.S1_at--700--9431Chr04:25201447..25201471 (25 bp)
TCGGGACGCTCTTCCCGGTGTTCAA
LOC_Os04g42970
OsAffx.14248.1.S1_at--449--7531Chr04:25201539..25201563 (25 bp)
GTGGCGGCCGTCGTGTCGTACGGCG
LOC_Os04g42970
OsAffx.14248.1.S1_at--327--3471Chr04:25201649..25201673 (25 bp)
CAGGGACGTGTGGATGCCGTGGGTC
LOC_Os04g42970
OsAffx.14248.1.S1_at--981--3931Chr04:25201683..25201707 (25 bp)
CGGCTGGCCCAGGAGATGAAGCGAG
LOC_Os04g42970
OsAffx.14248.1.S1_at--7--9071Chr04:25201753..25201777 (25 bp)
TGCTTGTTTGCAAGGCCAAGATCGG
LOC_Os04g42970
Target Sequence 
GGGAGTAGCAGCCGCTCTCATCGCCGCCTCGCTGTTCTGCCTCTTCATCGCTTTGGTCCTCCAGTCGACGTCGACGTCCG
GCGGTGGCGGTGACGGCGGTGGTGTCCGGGAAGAATGCGGCCGCGCCGCGTACTCGGCGGCCGTCACCGTGCTCAGCGGG
CTGCACCCCTCGAACGACCTGCTGCATATCGGGACGCTCTTCCCGGTGTTCAACCTCACCGTCCACGTCGAGGTGCCCCC
CGGCGGGAAGGCCGGCGGCGTGTGCCTCGGCGGGCACTCGGTGGCGGCCGTCGTGTCGTACGGCGGCGCGTTCCTCGGCG
AGGGCTCGGTGGGGCGCGTCTGCGTGGAGCCGCAGCAGCAGGAGGGCGACGTCGCGGCGACGGCGTGGGGCAGGGACGTG
TGGATGCCGTGGGTCCTGAGGAGGCGGCTGGCCCAGGAGATGAAGCGAGGCGAGGCGGAGCTGGAGGTCGCCGTGCCGAT
GCGTGGGGGCGATGTGCTTGTTTGCAAGGCCAAGATCGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14248.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis