Browse Element(s) Details


OsAffx.14334.1.S1_at

Description tigr:9632.m04752
TID=OsAffx.14334.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4898011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g48940Os.32496.1.S1_at9/114+28967957..28974485Mechanosensitive ion channel family protein, expressed
LOC_Os04g48950Os.52867.1.S1_at11/114+28975295..28977965fringe protein, putative, expressed
LOC_Os04g48950OsAffx.31336.1.S1_x_at1/114+28975295..28977965fringe protein, putative, expressed
LOC_Os04g48960OsAffx.14333.1.S1_at10/114+28978925..28980815hypothetical protein
LOC_Os04g48970OsAffx.22034.1.S1_at2/114+28981295..28984868transposon protein, putative, Mutator sub-class, expressed
LOC_Os04g48980OsAffx.14334.1.S1_at11/114+28989138..28989398hypothetical protein
LOC_Os04g48989NANA4+28992501..28992744NA
LOC_Os04g49000Os.53886.1.S1_at11/114+28994256..28995284Zinc finger, C3HC4 type family protein, expressed
LOC_Os04g49010NANA4+29000111..29001526hypothetical protein
LOC_Os04g49020OsAffx.22896.1.S1_x_at1/114+29003818..29008320retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g49030NANA4+29009083..29010843transposon protein, putative, unclassified
LOC_Os04g49040OsAffx.31069.1.S1_at3/114+29011454..29014496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g49040OsAffx.31069.1.S1_x_at2/114+29011454..29014496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g49040Os.53479.1.S1_x_at1/114+29011454..29014496retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g49040OsAffx.31069.2.S1_x_at1/114+29011454..29014496retrotransposon protein, putative, Ty3-gypsy subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14334.1.S1_at--344--8891Chr04:28989327..28989351 (25 bp)
TGAGGTGCTCACCAACAAGTCTGGG
LOC_Os04g48980
OsAffx.14334.1.S1_at--441--2851Chr04:28989311..28989335 (25 bp)
AAGTCTGGGTTGTTTTCATCGATGA
LOC_Os04g48980
OsAffx.14334.1.S1_at--1064--6631Chr04:28989303..28989327 (25 bp)
GTTGTTTTCATCGATGAGTCCTCGC
LOC_Os04g48980
OsAffx.14334.1.S1_at--976--511Chr04:28989294..28989318 (25 bp)
ATCGATGAGTCCTCGCCGCACAAAC
LOC_Os04g48980
OsAffx.14334.1.S1_at--863--4511Chr04:28989280..28989304 (25 bp)
GCCGCACAAACTACATCGAGACAGA
LOC_Os04g48980
OsAffx.14334.1.S1_at--287--5991Chr04:28989263..28989287 (25 bp)
GAGACAGACACGACTTCCCTTATAC
LOC_Os04g48980
OsAffx.14334.1.S1_at--18--10331Chr04:28989244..28989268 (25 bp)
TTATACTCGGCCGACAAATCGACGA
LOC_Os04g48980
OsAffx.14334.1.S1_at--931--2271Chr04:28989229..28989253 (25 bp)
AAATCGACGATCCTACCGGCTGCGA
LOC_Os04g48980
OsAffx.14334.1.S1_at--753--4591Chr04:28989208..28989232 (25 bp)
GCGACATGGCGCACGCACGGGCTTA
LOC_Os04g48980
OsAffx.14334.1.S1_at--1128--8291Chr04:28989189..28989213 (25 bp)
GGCTTACACCTCCTATTTCACCATT
LOC_Os04g48980
OsAffx.14334.1.S1_at--1154--10191Chr04:28989176..28989200 (25 bp)
TATTTCACCATTCGGCTGTCGTCGT
LOC_Os04g48980
Target Sequence 
TGAGGTGCTCACCAACAAGTCTGGGTTGTTTTCATCGATGAGTCCTCGCCGCACAAACTACATCGAGACAGACACGACTT
CCCTTATACTCGGCCGACAAATCGACGATCCTACCGGCTGCGACATGGCGCACGCACGGGCTTACACCTCCTATTTCACC
ATTCGGCTGTCGTCGT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14334.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis