Browse Element(s) Details


OsAffx.14349.1.A1_at

Description tigr:9632.m04833
TID=OsAffx.14349.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g4977011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g49710NANA4+29432720..29433136hypothetical protein
LOC_Os04g49720OsAffx.26542.1.S1_s_at11/114+29435004..29435635pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g49720OsAffx.26542.1.S1_at11/114+29435004..29435635pectinesterase inhibitor domain containing protein, expressed
LOC_Os04g49730OsAffx.14347.1.S1_at11/114+29437004..29437564pectinesterase inhibitor domain containing protein
LOC_Os04g49739Os.25086.1.A1_at11/114+29439612..29441489purine permease family protein, putative, expressed
LOC_Os04g49748Os.20292.1.S1_s_at11/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49748Os.20292.1.S1_at11/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49748OsAffx.9915.1.S1_x_at1/114+29441895..29443371purine permease family protein, putative, expressed
LOC_Os04g49757Os.20614.3.S1_x_at11/114+29447058..29453541purine permease family protein, putative, expressed
LOC_Os04g49757Os.20614.2.S1_at11/114+29447058..29453541purine permease family protein, putative, expressed
LOC_Os04g49770OsAffx.14349.1.A1_at11/114+29454372..29455993hypothetical protein
LOC_Os04g49780NANA4+29457852..29461477transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os04g49790Os.55410.1.S1_at11/114+29463387..29468880retrotransposon protein, putative, Ty1-copia subclass, expressed
LOC_Os04g49800NANA4+29469388..29474853retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g49810OsAffx.21897.5.S1_x_at4/114+29475814..29478738retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os04g49820NANA4+29480189..29480698retrotransposon protein, putative, Ty1-copia subclass

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14349.1.A1_at--781--7473Chr06:11319637..11319661 (25 bp)
GTGTGTGTTTGATTACCCTTTTCCA
NONE
OsAffx.14349.1.A1_at--837--8674Chr11:849416..849484 (25 bp)
TGTGTTTGATTACCCTTTTCCAGAG
NONE
OsAffx.14349.1.A1_at--356--8772Chr10:20467441..20467463 (23 bp)
TGATTACCCTTTTCCAGAGGTCGGG
NONE
OsAffx.14349.1.A1_at--1021--7351Chr04:29455872..29455896 (25 bp)
GTGAAGCATTGAACCATTTGCCTCG
LOC_Os04g49770
OsAffx.14349.1.A1_at--526--2711Chr04:29455875..29455899 (25 bp)
AAGCATTGAACCATTTGCCTCGGGC
LOC_Os04g49770
OsAffx.14349.1.A1_at--802--11Chr04:29455879..29455903 (25 bp)
ATTGAACCATTTGCCTCGGGCCGCA
LOC_Os04g49770
OsAffx.14349.1.A1_at--182--9434Chr04:29492895..29492919 (25 bp)
TCGGGCCGCATCTCTGTTAAATAGT
NONE
OsAffx.14349.1.A1_at--829--4514Chr04:29492899..29492923 (25 bp)
GCCGCATCTCTGTTAAATAGTGGTA
NONE
OsAffx.14349.1.A1_at--245--6956Chr04:29492921..29492945 (25 bp)
GTAGAAACAGCCTCTACCGTGGCTT
NONE
OsAffx.14349.1.A1_at--267--3772Chr04:29492932..29492956 (25 bp)
CTCTACCGTGGCTTACAATGTTCAG
NONE
OsAffx.14349.1.A1_at--1025--7532Chr04:29492939..29492963 (25 bp)
GTGGCTTACAATGTTCAGTTACAAG
NONE
Target Sequence 
GTGTGTGTTTGATTACCCTTTTCCAGAGGTCGGGGTCGGGCTTCTTGAGGACGATGACGCGGTCGAGCAGAGCGGCAGGG
TCACGGATGCGCCAGCCGCACTTGGCAGGCACGACGCGGCGGCGCTCATACACAGTGACGGTGGTGTTGCGGCTGTGATA
AAATGTGAAGCATTGAACCATTTGCCTCGGGCCGCATCTCTGTTAAATAGTGGTAGAAACAGCCTCTACCGTGGCTTACA
ATGTTCAGTTACAAG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14349.1.A1_at     

Putative homologies in rice

Putative homologies in arabidopsis