Browse Element(s) Details


OsAffx.14381.1.S1_x_at

Description tigr:9632.m05107
TID=OsAffx.14381.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5270011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52680OsAffx.26577.1.S1_at4/114+31135177..31136141hypothetical protein
LOC_Os04g52690Os.25046.1.S1_at10/114+31145050..31150338AAA-type ATPase family protein, putative, expressed
LOC_Os04g52700OsAffx.14381.1.S1_x_at11/114+31160287..31161664expressed protein
LOC_Os04g52710Os.11743.1.S1_at11/114+31170607..31174272Imidazoleglycerol-phosphate dehydratase, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_s_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52730Os.20272.1.S1_a_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52730OsAffx.4159.1.S1_x_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14381.1.S1_x_at--328--8591Chr04:31161483..31161507 (25 bp)
TGGTCGACCTCGAGGTGAAGGTTCC
LOC_Os04g52700
OsAffx.14381.1.S1_x_at--1101--7191Chr04:31161481..31161505 (25 bp)
GTCGACCTCGAGGTGAAGGTTCCCG
LOC_Os04g52700
OsAffx.14381.1.S1_x_at--643--5791Chr04:31161478..31161502 (25 bp)
GACCTCGAGGTGAAGGTTCCCGCCG
LOC_Os04g52700
OsAffx.14381.1.S1_x_at--149--9371Chr04:31161474..31161498 (25 bp)
TCGAGGTGAAGGTTCCCGCCGGGTG
LOC_Os04g52700
OsAffx.14381.1.S1_x_at--1159--8031Chr04:31161452..31161473 (22 bp)
GGAGAGGCGGCTTGATCTCATGTCA
LOC_Os04g52700
OsAffx.14381.1.S1_x_at--676--6411Chr04:31161082..31161460 (25 bp)
GATCTCATGTCAGGGAAGACGTTCT
LOC_Os04g52700
OsAffx.14381.1.S1_x_at--535--3751Chr04:31161079..31161457 (25 bp)
CTCATGTCAGGGAAGACGTTCTTGA
LOC_Os04g52700
OsAffx.14381.1.S1_x_at--253--8731Chr04:31161075..31161098 (24 bp)
TGTCAGGGAAGACGTTCTTGACTCC
LOC_Os04g52700
OsAffx.14381.1.S1_x_at--224--8191Chr04:31161069..31161093 (25 bp)
GGAAGACGTTCTTGACTCCTCGGCT
LOC_Os04g52700
OsAffx.14381.1.S1_x_at--704--6711Chr04:31161062..31161086 (25 bp)
GTTCTTGACTCCTCGGCTCCAGTGC
LOC_Os04g52700
OsAffx.14381.1.S1_x_at--111--8331Chr04:31161048..31161072 (25 bp)
GGCTCCAGTGCGTCCATGTCGGCCA
LOC_Os04g52700
Target Sequence 
TGGTCGACCTCGAGGTGAAGGTTCCCGCCGGGTGGGAGAGGCGGCTTGATCTCATGTCAGGGAAGACGTTCTTGACTCCT
CGGCTCCAGTGCGTCCATGTCGGCCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14381.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis