Browse Element(s) Details


Os.11743.1.S1_at

Description gb:AK073351.1
DB_XREF= gi:32983374
TID=Os.11743.1
CNT=5
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.11743 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033025I19, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033025I19, full insert sequence.
FL= gb:AK073351.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5271011/11Imidazoleglycerol-phosphate dehydratase, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52690Os.25046.1.S1_at10/114+31145050..31150338AAA-type ATPase family protein, putative, expressed
LOC_Os04g52700OsAffx.14381.1.S1_x_at11/114+31160287..31161664expressed protein
LOC_Os04g52710Os.11743.1.S1_at11/114+31170607..31174272Imidazoleglycerol-phosphate dehydratase, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_s_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52730Os.20272.1.S1_a_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52730OsAffx.4159.1.S1_x_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52740NANA4+31188422..31188835expressed protein
LOC_Os04g52750Os.55408.1.S1_at11/114+31191452..31191913expressed protein
LOC_Os04g52760Os.19792.1.S1_at11/114+31193087..31195539Gamma-soluble NSF attachment protein, putative, expressed
LOC_Os04g52770Os.4548.1.S1_at11/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52770Os.5217.1.S1_at7/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000105biological_processhistidine biosynthesis
GO:0004424molecular_functionimidazoleglycerol-phosphate dehydratase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.11743.1.S1_at--765--10511Chr04:31173350..31173564 (25 bp)
TTCACATCCGTCAGCTTGCTGGAAA
LOC_Os04g52710
Os.11743.1.S1_at--312--2351Chr04:31173596..31173620 (25 bp)
AAAGCATTTGCTAGAGCCCTTCGAC
LOC_Os04g52710
Os.11743.1.S1_at--139--2151Chr04:31173626..31173650 (25 bp)
ACAGAATATGACTTGCGCCGACGCG
LOC_Os04g52710
Os.11743.1.S1_at--524--3871Chr04:31173654..31173841 (25 bp)
CTGTCCCCAGCTCAAAAGGTGTGTT
LOC_Os04g52710
Os.11743.1.S1_at--99--7771Chr04:31173878..31173902 (25 bp)
GGTGCATGCTACTGTTCCTTGTAGA
LOC_Os04g52710
Os.11743.1.S1_at--934--2291Chr04:31173923..31173947 (25 bp)
AAATGGAATGGCCTCTACAGCTCCT
LOC_Os04g52710
Os.11743.1.S1_at--554--7611Chr04:31173965..31173989 (25 bp)
GGGAATCTCCGTTGGTTGCGATAAC
LOC_Os04g52710
Os.11743.1.S1_at--153--1511Chr04:31174038..31174062 (25 bp)
AGCACTGTTCTCATGATCTATTCTT
LOC_Os04g52710
Os.11743.1.S1_at--874--2111Chr04:31174088..31174112 (25 bp)
ACATGTCCGGCCGTTATTGCAATTT
LOC_Os04g52710
Os.11743.1.S1_at--883--6051Chr04:31174130..31174154 (25 bp)
GAGTTGTCATCTGTGTTGTCCATCA
LOC_Os04g52710
Os.11743.1.S1_at--245--3071Chr04:31174239..31174263 (25 bp)
AATAAGTTTTGCACCTACGTTTCTG
LOC_Os04g52710
Target Sequence 
TTCACATCCGTCAGCTTGCTGGAAAAAACTCACACCATATTATTGAGGCAACTTTCAAAGCATTTGCTAGAGCCCTTCGA
CAAGCAACAGAATATGACTTGCGCCGACGCGGCACTGTCCCCAGCTCAAAAGGTGTGTTGTCAAGGTCATAGTGTTGCAG
GTTTGGAAAACAAGGGGTGCATGCTACTGTTCCTTGTAGATTGCAATATTCAAAGGAAACAAATGGAATGGCCTCTACAG
CTCCTCGAGTCCTACTTACCCTGGGAATCTCCGTTGGTTGCGATAACAGAACATGAAGCCATTGCTAACTAGATCACCAA
AAAAGGAACAAATTTAGCACTGTTCTCATGATCTATTCTTCTGTAACATTTAGCATTCGAAATAAACATGTCCGGCCGTT
ATTGCAATTTTGGATGCTAGATGTCTTGAGTTGTCATCTGTGTTGTCCATCAAACGGCNTNTCTANCAGCTCAGTTTCAC
TCTGTATGAGTTCAGAGTTGGTCATGTTGCTGAACCTNNGTATTTTCAAGGGAATAAATAAGTTTTGCACCTACGTTTCT
G

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.11743.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis