Browse Element(s) Details


Os.4548.1.S1_at

Description gb:AK106689.1
DB_XREF= gi:32991898
TID=Os.4548.1
CNT=4
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.4548 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-114-C05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-114-C05, full insert sequence.
FL= gb:AK106689.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5277011/11Helix-loop-helix DNA-binding domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52710Os.11743.1.S1_at11/114+31170607..31174272Imidazoleglycerol-phosphate dehydratase, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_s_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52730Os.20272.1.S1_a_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52730OsAffx.4159.1.S1_x_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52740NANA4+31188422..31188835expressed protein
LOC_Os04g52750Os.55408.1.S1_at11/114+31191452..31191913expressed protein
LOC_Os04g52760Os.19792.1.S1_at11/114+31193087..31195539Gamma-soluble NSF attachment protein, putative, expressed
LOC_Os04g52770Os.4548.1.S1_at11/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52770Os.5217.1.S1_at7/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52780Os.50342.1.S1_at11/114+31201743..31206034Leucine Rich Repeat family protein, expressed
LOC_Os04g52790OsAffx.26579.1.S1_at11/114+31213376..31213894hypothetical protein
LOC_Os04g52800OsAffx.14383.1.S1_at11/114+31215878..31216897hypothetical protein
LOC_Os04g52810OsAffx.4160.1.S1_at11/114+31220876..31224278No apical meristem protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4548.1.S1_at--1090--1331Chr04:31200189..31200213 (25 bp)
AGAGCCACCTCAAAATTTCCTCAGA
LOC_Os04g52770
Os.4548.1.S1_at--390--3171Chr04:31200221..31200241 (21 bp)
AATTGCAGTTGTACACGCCGGAGCA
LOC_Os04g52770
Os.4548.1.S1_at--66--6971Chr04:31200640..31200664 (25 bp)
GTAGCAGTGGCCACAACAGCGGTTG
LOC_Os04g52770
Os.4548.1.S1_at--994--8211Chr04:31200676..31200700 (25 bp)
GGAATTCATCGTACAACTTCTTGGA
LOC_Os04g52770
Os.4548.1.S1_at--395--7391Chr04:31200701..31200725 (25 bp)
GTGATGACCACCTGACGAGTTACTA
LOC_Os04g52770
Os.4548.1.S1_at--492--6331Chr04:31200741..31200765 (25 bp)
GATGCAGTCTAGACTCTACTACTCT
LOC_Os04g52770
Os.4548.1.S1_at--363--1991Chr04:31200761..31200785 (25 bp)
ACTCTAGACTGCATAACCTTCATTC
LOC_Os04g52770
Os.4548.1.S1_at--1108--6111Chr04:31200826..31200850 (25 bp)
GAGTGATGAATCTACTGCATGCAGT
LOC_Os04g52770
Os.4548.1.S1_at--588--3791Chr04:31200903..31200927 (25 bp)
CTCGTCATGTTCTGTGCATACAAGA
LOC_Os04g52770
Os.4548.1.S1_at--628--1411Chr04:31200966..31200990 (25 bp)
AGACAGTCTACTTCCTGCTGCTGAT
LOC_Os04g52770
Os.4548.1.S1_at--297--9111Chr04:31200981..31201005 (25 bp)
TGCTGCTGATGCTTATGTGCTCTGA
LOC_Os04g52770
Target Sequence 
AGAGCCACCTCAAAATTTCCTCAGACCACCNAAATTGCAGTTGTACACGCCGGAGCAGCAGAGAAGAGGTCTAGCTAGTA
GCAGTGGCCACAACAGCGGTTGGATCACGGAGAGGAATTCATCGTACAACTTCTTGGAGTGATGACCACCTGACGAGTTA
CTAAGAGATCCAGAAGCAGATGCAGTCTAGACTCTACTACTCTAGACTGCATAACCTTCATTCAGTTCATGGTGTTCCTG
GAGATGAAACAAGTTGCTCAATGGAGTGATGAATCTACTGCATGCAGTTAACTAGTTAATTTTGTACGTCAANTAAATAG
TGGTGATCCTGATCTTGCTTCCTCGTCATGTTCTGTGCATACAAGACCTAAAGCGTTTTTNGTGATCTCTGTACTGTATA
TTAGCAGACAGTCTACTTCCTGCTGCTGATGCTTATGTGCTCTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4548.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis