Browse Element(s) Details


Os.19792.1.S1_at

Description gb:AK103625.1
DB_XREF= gi:32988834
TID=Os.19792.1
CNT=9
FEA=FLmRNA
TIER=FL
STK=0
UG=Os.19792 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033133N17, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033133N17, full insert sequence.
FL= gb:AK103625.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5276011/11Gamma-soluble NSF attachment protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52710Os.11743.1.S1_at11/114+31170607..31174272Imidazoleglycerol-phosphate dehydratase, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_s_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52730Os.20272.1.S1_a_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52730OsAffx.4159.1.S1_x_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52740NANA4+31188422..31188835expressed protein
LOC_Os04g52750Os.55408.1.S1_at11/114+31191452..31191913expressed protein
LOC_Os04g52760Os.19792.1.S1_at11/114+31193087..31195539Gamma-soluble NSF attachment protein, putative, expressed
LOC_Os04g52770Os.4548.1.S1_at11/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52770Os.5217.1.S1_at7/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52780Os.50342.1.S1_at11/114+31201743..31206034Leucine Rich Repeat family protein, expressed
LOC_Os04g52790OsAffx.26579.1.S1_at11/114+31213376..31213894hypothetical protein
LOC_Os04g52800OsAffx.14383.1.S1_at11/114+31215878..31216897hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006886biological_processintracellular protein transport
GO:0005783cellular_componentendoplasmic reticulum
GO:0005794cellular_componentGolgi apparatus
GO:0005478molecular_functionintracellular transporter activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19792.1.S1_at--356--10391Chr04:31194446..31194470 (25 bp)
TTTTCTAAGACTTGGTTCAGCTGCT
LOC_Os04g52760
Os.19792.1.S1_at--894--9631Chr04:31194430..31194454 (25 bp)
TCAGCTGCTGATAAGTGTAATGCCA
LOC_Os04g52760
Os.19792.1.S1_at--697--7431Chr04:31194416..31194440 (25 bp)
GTGTAATGCCATCAACAGCCAGTGC
LOC_Os04g52760
Os.19792.1.S1_at--517--7591Chr04:31194120..31194144 (25 bp)
GGGCTATTTGAGTGCAATCATCATC
LOC_Os04g52760
Os.19792.1.S1_at--30--10151Chr04:31194089..31194113 (25 bp)
TATGCCCATGATTTTCAACAAGCTC
LOC_Os04g52760
Os.19792.1.S1_at--1115--671Chr04:31193924..31194076 (25 bp)
ATGACTGCTCAGAGGTTCAAGCCTT
LOC_Os04g52760
Os.19792.1.S1_at--1029--3231Chr04:31193907..31193931 (25 bp)
CAAGCCTTCCTTAACAGTGACCAGA
LOC_Os04g52760
Os.19792.1.S1_at--1001--2851Chr04:31193809..31193833 (25 bp)
AAGTGCCATCAAACACCTTGACCAT
LOC_Os04g52760
Os.19792.1.S1_at--440--5691Chr04:31193381..31193405 (25 bp)
GACTTGCAAAGAAACTACCTACGGG
LOC_Os04g52760
Os.19792.1.S1_at--836--8091Chr04:31193305..31193329 (25 bp)
GGACGAGAATGACCTAACTTAATAC
LOC_Os04g52760
Os.19792.1.S1_at--805--2551Chr04:31193114..31193138 (25 bp)
AACTGTCATATCTGATTTCTGCACA
LOC_Os04g52760
Target Sequence 
TTTTCTAAGACTTGGTTCAGCTGCTGATAAGTGTAATGCCATCAACAGCCAGTGCAAGGGCTATTTGAGTGCAATCATCA
TCTNCCTTTATGCCCATGATTTTCAACAAGCTCAGAAATNTTACAATGACTGCTCAGAGGTTCAAGCCTTCCTTAACAGT
GACCAGAATCGATGTGCAATGAAACTGCTGTCTGCTTATGAGGAAGGTGATGCTGAAGGAATCAAACAGGCTGCACAATC
AAGTGCCATCAAACACCTTGACCATGTGGTAATTCGACTTGCAAAGAAACTACCTACGGGTGATCTGCAGACCATNCAAG
AAATTGGCAGACGATGACGGCGAGGATTCTTTGGACGAGAATGACCTAACTTAATACCAAACTACCCGTACCGGGAGACG
CTGAGAAAGCAAATATTTGAGGTTGACTCATGTTACCGTTGATGAACATGAGCGATTTGTAAAAAGAAGATATCGATGTA
CACGGTACAAAGTACAAACTTGTGTGAGGCAGTCTGTATCTTGATATTTATCATGCTCAGCTCAACTGTCATATCTGATT
TCTGCACA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19792.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis