Browse Element(s) Details


Os.50342.1.S1_at

Description gb:AK120799.1
DB_XREF= gi:37990422
TID=Os.50342.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50342 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023012H18, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023012H18, full insert sequence.
FL= gb:AK120799.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5278011/11Leucine Rich Repeat family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52730Os.20272.1.S1_a_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52730OsAffx.4159.1.S1_x_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52740NANA4+31188422..31188835expressed protein
LOC_Os04g52750Os.55408.1.S1_at11/114+31191452..31191913expressed protein
LOC_Os04g52760Os.19792.1.S1_at11/114+31193087..31195539Gamma-soluble NSF attachment protein, putative, expressed
LOC_Os04g52770Os.4548.1.S1_at11/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52770Os.5217.1.S1_at7/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52780Os.50342.1.S1_at11/114+31201743..31206034Leucine Rich Repeat family protein, expressed
LOC_Os04g52790OsAffx.26579.1.S1_at11/114+31213376..31213894hypothetical protein
LOC_Os04g52800OsAffx.14383.1.S1_at11/114+31215878..31216897hypothetical protein
LOC_Os04g52810OsAffx.4160.1.S1_at11/114+31220876..31224278No apical meristem protein, expressed
LOC_Os04g52820OsAffx.26580.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.57094.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.51708.1.S1_at10/114+31229488..31233456hypothetical protein

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0009598biological_processdetection of pathogenic bacteria
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.50342.1.S1_at--625--9091Chr04:31202175..31202199 (25 bp)
TGCTCTCGTCCTTGCTCAAGATGAG
LOC_Os04g52780
Os.50342.1.S1_at--886--5971Chr04:31202111..31202135 (25 bp)
GAGAAAAGCTAAACTCTCGCTGCAA
LOC_Os04g52780
Os.50342.1.S1_at--20--2551Chr04:31202100..31202124 (25 bp)
AACTCTCGCTGCAATTCTGCAGAAT
LOC_Os04g52780
Os.50342.1.S1_at--248--1352Chr04:31202039..31202063 (25 bp)
AGAGTTCAGTTCATGATGATCTCAA
LOC_Os04g52780
Os.50342.1.S1_at--775--8771Chr04:31202000..31202024 (25 bp)
TGTTTGCATTGCGAACTTTCTCCAT
LOC_Os04g52780
Os.50342.1.S1_at--997--5472Chr04:31201988..31202012 (25 bp)
GAACTTTCTCCATTGATGAGGTGTA
LOC_Os04g52780
Os.50342.1.S1_at--79--711Chr04:31201973..31201997 (25 bp)
ATGAGGTGTACTGTTGCTACTGTGC
LOC_Os04g52780
Os.50342.1.S1_at--709--9051Chr04:31201951..31201975 (25 bp)
TGCATGGTCAAGGAGCCGTTCGTGT
LOC_Os04g52780
Os.50342.1.S1_at--520--5871Chr04:31201939..31201963 (25 bp)
GAGCCGTTCGTGTGAGCTTACTGAG
LOC_Os04g52780
Os.50342.1.S1_at--440--3631Chr04:31201923..31201947 (25 bp)
CTTACTGAGGGTGTGTTAGTTCTTC
LOC_Os04g52780
Os.50342.1.S1_at--860--10031Chr04:31201907..31201931 (25 bp)
TAGTTCTTCGGGAGTAAAGCTTTTG
LOC_Os04g52780
Target Sequence 
TGCTCTCGTCCTTGCTCAAGATGAGCAAGCTCGTCGGAGAAGACTGAACAAAAAAAAAAAAGAAGAGAAAAGCTAAACTC
TCGCTGCAATTCTGCAGAATGCAGCAGCGAAAACGTGCAAATTTCTTGGAAGATTCAGAGTTCAGTTCATGATGATCTCA
AATGGTTTTTCGAGTTGTTTGCATTGCGAACTTTCTCCATTGATGAGGTGTACTGTTGCTACTGTGCATGGTCAAGGAGC
CGTTCGTGTGAGCTTACTGAGGGTGTGTTAGTTCTTCGGGAGTAAAGCTTTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50342.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis