Browse Element(s) Details


Os.20272.1.S1_a_at

Description gb:AB097461.1
DB_XREF= gi:26106015
GEN=OsUEL-2
TID=Os.20272.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.20272 (NCBI UniGene Cluster)
DEF=Oryza sativa (japonica cultivar-group) mRNA for UDP-galactose 4-epimerase-like protein, complete cds.
PROD=UDP-galactose 4-epimerase-like protein
FL= gb:AK065875.1 gb:AB097461.1 gb:AK102657.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5273011/11UDP-glucose 4-epimerase family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52700OsAffx.14381.1.S1_x_at11/114+31160287..31161664expressed protein
LOC_Os04g52710Os.11743.1.S1_at11/114+31170607..31174272Imidazoleglycerol-phosphate dehydratase, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_s_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52730Os.20272.1.S1_a_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52730OsAffx.4159.1.S1_x_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52740NANA4+31188422..31188835expressed protein
LOC_Os04g52750Os.55408.1.S1_at11/114+31191452..31191913expressed protein
LOC_Os04g52760Os.19792.1.S1_at11/114+31193087..31195539Gamma-soluble NSF attachment protein, putative, expressed
LOC_Os04g52770Os.4548.1.S1_at11/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52770Os.5217.1.S1_at7/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52780Os.50342.1.S1_at11/114+31201743..31206034Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0009225biological_processnucleotide-sugar metabolism
GO:0009832biological_processcell wall biosynthesis (sensu Magnoliophyta)
GO:0019567biological_processarabinose biosynthesis
GO:0005794cellular_componentGolgi apparatus
GO:0003824molecular_functioncatalytic activity
GO:0050373molecular_functionUDP-arabinose 4-epimerase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.20272.1.S1_a_at--698--10091Chr04:31187659..31187683 (25 bp)
TATGGATCGGCCTGATTCAGGGTTT
LOC_Os04g52730
Os.20272.1.S1_a_at--816--4471Chr04:31187668..31187692 (25 bp)
GCCTGATTCAGGGTTTAATAGATTC
LOC_Os04g52730
Os.20272.1.S1_a_at--817--271Chr04:31187685..31187709 (25 bp)
ATAGATTCAGACTTAAGGTACACAG
LOC_Os04g52730
Os.20272.1.S1_a_at--10--2911Chr04:31187699..31187723 (25 bp)
AAGGTACACAGATTCTCAGGTCCAT
LOC_Os04g52730
Os.20272.1.S1_a_at--1127--2131Chr04:31187706..31187730 (25 bp)
ACAGATTCTCAGGTCCATGTGCAGA
LOC_Os04g52730
Os.20272.1.S1_a_at--525--7271Chr04:31187718..31187742 (25 bp)
GTCCATGTGCAGAAATCATATATCC
LOC_Os04g52730
Os.20272.1.S1_a_at--411--251Chr04:31187737..31187761 (25 bp)
ATATCCTTCAGAAAATTGGTTCTTC
LOC_Os04g52730
Os.20272.1.S1_a_at--452--31Chr04:31187751..31187775 (25 bp)
ATTGGTTCTTCAGCACAAACATAGT
LOC_Os04g52730
Os.20272.1.S1_a_at--70--10071Chr04:31187772..31187796 (25 bp)
TAGTGCCAGGCACAGAAGTGTTCTG
LOC_Os04g52730
Os.20272.1.S1_a_at--76--8271Chr04:31187806..31187830 (25 bp)
GGCAGCATTTGGAAGAAGATACAGA
LOC_Os04g52730
Os.20272.1.S1_a_at--379--2331Chr04:31187830..31187854 (25 bp)
AAAGAATGGCCCCTCTATTCCTGGC
LOC_Os04g52730
Target Sequence 
TATGGATCGGCCTGATTCAGGGTTTAATAGATTCAGACTTAAGGTACACAGATTCTCAGGTCCATGTGCAGAAATCATAT
ATCCTTCAGAAAATTGGTTCTTCAGCACAAACATAGTGCCAGGCACAGAAGTGTTCTGAATTTTTTTGGCAGCATTTGGA
AGAAGATACAGAAAGAATGGCCCCTCTATTCCTGGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.20272.1.S1_a_at     

Putative homologies in rice

Putative homologies in arabidopsis