Browse Element(s) Details


OsAffx.4158.1.S1_at

Description tigr:9632.m05110
TID=OsAffx.4158.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cupin, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5272011/11Germin-like protein subfamily 1 member 8 precursor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52690Os.25046.1.S1_at10/114+31145050..31150338AAA-type ATPase family protein, putative, expressed
LOC_Os04g52700OsAffx.14381.1.S1_x_at11/114+31160287..31161664expressed protein
LOC_Os04g52710Os.11743.1.S1_at11/114+31170607..31174272Imidazoleglycerol-phosphate dehydratase, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_s_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52730Os.20272.1.S1_a_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52730OsAffx.4159.1.S1_x_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52740NANA4+31188422..31188835expressed protein
LOC_Os04g52750Os.55408.1.S1_at11/114+31191452..31191913expressed protein
LOC_Os04g52760Os.19792.1.S1_at11/114+31193087..31195539Gamma-soluble NSF attachment protein, putative, expressed
LOC_Os04g52770Os.4548.1.S1_at11/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52770Os.5217.1.S1_at7/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000325cellular_componentvacuole (sensu Magnoliophyta)
GO:0005576cellular_componentextracellular region
GO:0005886cellular_componentplasma membrane
GO:0031012cellular_componentextracellular matrix
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4158.1.S1_at--700--3911Chr04:31175074..31175098 (25 bp)
CGGCGTTCCAGGCAACACCGTGAAC
LOC_Os04g52720
OsAffx.4158.1.S1_at--199--6671Chr04:31175070..31175094 (25 bp)
GTTCCAGGCAACACCGTGAACGCAC
LOC_Os04g52720
OsAffx.4158.1.S1_at--350--931Chr04:31175065..31175089 (25 bp)
AGGCAACACCGTGAACGCACAGGGC
LOC_Os04g52720
OsAffx.4158.1.S1_at--224--5151Chr04:31175063..31175087 (25 bp)
GCAACACCGTGAACGCACAGGGCTC
LOC_Os04g52720
OsAffx.4158.1.S1_at--198--3991Chr04:31175056..31175080 (25 bp)
CGTGAACGCACAGGGCTCCGCGGTA
LOC_Os04g52720
OsAffx.4158.1.S1_at--190--7571Chr04:31175044..31175068 (25 bp)
GGGCTCCGCGGTAACCCCTGTGACG
LOC_Os04g52720
OsAffx.4158.1.S1_at--509--4671Chr04:31175037..31175061 (25 bp)
GCGGTAACCCCTGTGACGGTGAACG
LOC_Os04g52720
OsAffx.4158.1.S1_at--22--7651Chr04:31175035..31175059 (25 bp)
GGTAACCCCTGTGACGGTGAACGAG
LOC_Os04g52720
OsAffx.4158.1.S1_at--425--7051Chr04:31175034..31175058 (25 bp)
GTAACCCCTGTGACGGTGAACGAGC
LOC_Os04g52720
OsAffx.4158.1.S1_at--925--9091Chr04:31174829..31174853 (25 bp)
TGCTCGGCCCCGGAGATGTCTTCGT
LOC_Os04g52720
OsAffx.4158.1.S1_at--843--9411Chr04:31174826..31174850 (25 bp)
TCGGCCCCGGAGATGTCTTCGTCTT
LOC_Os04g52720
Target Sequence 
CGGCGTTCCAGGCAACACCGTGAACGCACAGGGCTCCGCGGTAACCCCTGTGACGGTGAACGAGCTGCCGGGCCTCAACA
CGCTCGGCATCTCGTTCGCCCGCATCGACTTTGCCCCCAACGGGCAAAACCCGCCGCACACCCACCCTCGTGCCACCGAG
ATCCTCACCGTCCTCCAGGGCACCCTCCTCGTCGGCTTCGTCACATCCAACCAGCCGGGCGGTGGCAACTTGCAGTTCAC
CAAGCTGCTCGGCCCCGGAGATGTCTTCGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4158.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis