Browse Element(s) Details


Os.55408.1.S1_at

Description gb:AK108024.1
DB_XREF= gi:32993233
TID=Os.55408.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.55408 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-136-A06, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-136-A06, full insert sequence.
FL= gb:AK108024.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5275011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52710Os.11743.1.S1_at11/114+31170607..31174272Imidazoleglycerol-phosphate dehydratase, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_s_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52720OsAffx.4158.1.S1_at11/114+31174540..31176126Germin-like protein subfamily 1 member 8 precursor, putative, expressed
LOC_Os04g52730Os.20272.1.S1_a_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52730OsAffx.4159.1.S1_x_at11/114+31184330..31188216UDP-glucose 4-epimerase family protein, expressed
LOC_Os04g52740NANA4+31188422..31188835expressed protein
LOC_Os04g52750Os.55408.1.S1_at11/114+31191452..31191913expressed protein
LOC_Os04g52760Os.19792.1.S1_at11/114+31193087..31195539Gamma-soluble NSF attachment protein, putative, expressed
LOC_Os04g52770Os.4548.1.S1_at11/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52770Os.5217.1.S1_at7/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52780Os.50342.1.S1_at11/114+31201743..31206034Leucine Rich Repeat family protein, expressed
LOC_Os04g52790OsAffx.26579.1.S1_at11/114+31213376..31213894hypothetical protein
LOC_Os04g52800OsAffx.14383.1.S1_at11/114+31215878..31216897hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.55408.1.S1_at--1019--5191Chr04:31191483..31191507 (25 bp)
GAATTCGCCGAACAGTGGAAAGCTA
LOC_Os04g52750
Os.55408.1.S1_at--674--291Chr04:31191507..31191531 (25 bp)
ATAGCAGCAGTCATGGCCAAGCACC
LOC_Os04g52750
Os.55408.1.S1_at--683--8451Chr04:31191520..31191544 (25 bp)
TGGCCAAGCACCACAATCGTCGTCT
LOC_Os04g52750
Os.55408.1.S1_at--146--9491Chr04:31191560..31191584 (25 bp)
TCTGCTGATGCTAGCGGCGTCGATC
LOC_Os04g52750
Os.55408.1.S1_at--1038--4151Chr04:31191601..31191625 (25 bp)
CGCCGCCCTGCGATGGTAGGAGACA
LOC_Os04g52750
Os.55408.1.S1_at--271--2531Chr04:31191747..31191771 (25 bp)
AACTCCGTCGTCAACAACAAATCTC
LOC_Os04g52750
Os.55408.1.S1_at--577--2271Chr04:31191765..31191789 (25 bp)
AAATCTCCATAGCTCTCTTCATCAT
LOC_Os04g52750
Os.55408.1.S1_at--1016--3071Chr04:31191828..31191852 (25 bp)
AATAATACTCTGTTGTGTACCAAAG
LOC_Os04g52750
Os.55408.1.S1_at--969--7431Chr04:31191842..31191866 (25 bp)
GTGTACCAAAGCAGAGAGTCCTTGA
LOC_Os04g52750
Os.55408.1.S1_at--1127--991Chr04:31191868..31191892 (25 bp)
AGGATCGTTGTGGTGTGTTCTTTAC
LOC_Os04g52750
Os.55408.1.S1_at--71--9551Chr04:31191886..31191910 (25 bp)
TCTTTACGTGAAAACCATCGGTCTT
LOC_Os04g52750
Target Sequence 
GAATTCGCCGAACAGTGGAAAGCTATAGCAGCAGTCATGGCCAAGCACCACAATCGTCGTCTCTCCGTCGTCGTCGCTCT
GCTGATGCTAGCGGCGTCGATCGTCCTGCTGCTTCTTGCGCCGCCCTGCGATGGTAGGAGACAGCTGAGGGGAAGCGAGG
CCACCAGAGGCGGTGGAGTCGGCGAGGAGAAGGCGTCGTTGCTGCCGCCTCCGATACCCAACCTGCCGCTGCCGCCCATC
GTCCCCGGGAATCCTCCTGCTCGCAACTCCGTCGTCAACAACAAATCTCCATAGCTCTCTTCATCATCATGTCTTTTTAA
GATAAGCTTGTTGTTGAGAGGTAGTAATAATACTCTGTTGTGTACCAAAGCAGAGAGTCCTTGAGAGGATCGTTGTGGTG
TGTTCTTTACGTGAAAACCATCGGTCTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.55408.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis