Browse Element(s) Details


OsAffx.4160.1.S1_at

Description tigr:9632.m05119
TID=OsAffx.4160.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=No apical meristem (NAM) protein, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5281011/11No apical meristem protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52770Os.4548.1.S1_at11/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52770Os.5217.1.S1_at7/114+31197320..31201037Helix-loop-helix DNA-binding domain containing protein, expressed
LOC_Os04g52780Os.50342.1.S1_at11/114+31201743..31206034Leucine Rich Repeat family protein, expressed
LOC_Os04g52790OsAffx.26579.1.S1_at11/114+31213376..31213894hypothetical protein
LOC_Os04g52800OsAffx.14383.1.S1_at11/114+31215878..31216897hypothetical protein
LOC_Os04g52810OsAffx.4160.1.S1_at11/114+31220876..31224278No apical meristem protein, expressed
LOC_Os04g52820OsAffx.26580.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.57094.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.51708.1.S1_at10/114+31229488..31233456hypothetical protein
LOC_Os04g52830Os.4693.1.S1_at11/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52830OsAffx.18753.3.S1_x_at1/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52840Os.4555.1.S1_at11/114+31244047..31247345Protein kinase domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0007275biological_processdevelopment
GO:0009734biological_processauxin mediated signaling pathway
GO:0009790biological_processembryonic development
GO:0009908biological_processflower development
GO:0010014biological_processmeristem initiation
GO:0010199biological_processorgan boundary specification
GO:0048467biological_processgynoecium development
GO:0003700molecular_functiontranscription factor activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4160.1.S1_at--394--1871Chr04:31223083..31223107 (25 bp)
ACGAGTTCCGCGTGGACGGACATGC
LOC_Os04g52810
OsAffx.4160.1.S1_at--99--7531Chr04:31223072..31223096 (25 bp)
GTGGACGGACATGCCGTTGCCGACC
LOC_Os04g52810
OsAffx.4160.1.S1_at--367--4291Chr04:31223027..31223050 (24 bp)
CCTCCTCATCTAATCTTCTCAAGGA
LOC_Os04g52810
OsAffx.4160.1.S1_at--408--9851Chr04:31221235..31221259 (25 bp)
TACAAGAGCAGAACGGCTACACCAA
LOC_Os04g52810
OsAffx.4160.1.S1_at--686--9851Chr04:31221218..31221242 (25 bp)
TACACCAAGGGCAGTAGTCTCCGGT
LOC_Os04g52810
OsAffx.4160.1.S1_at--160--8891Chr04:31221194..31221218 (25 bp)
TGAGGCTGCCGTGTCACTGTCCGGT
LOC_Os04g52810
OsAffx.4160.1.S1_at--516--4251Chr04:31221186..31221210 (25 bp)
CCGTGTCACTGTCCGGTGAGCTCAG
LOC_Os04g52810
OsAffx.4160.1.S1_at--915--1771Chr04:31221109..31221133 (25 bp)
ACCGGCGGCGGCTATTACGAGCAAG
LOC_Os04g52810
OsAffx.4160.1.S1_at--522--1411Chr04:31221086..31221110 (25 bp)
AGACAGCTCAGCTGGGTACCACCAC
LOC_Os04g52810
OsAffx.4160.1.S1_at--1141--5051Chr04:31221034..31221058 (25 bp)
GCAGCATTGCCGTTCAAGGACCTGA
LOC_Os04g52810
OsAffx.4160.1.S1_at--1094--951Chr04:31221018..31221042 (25 bp)
AGGACCTGACGGACTTCAGGGACCT
LOC_Os04g52810
Target Sequence 
ACGAGTTCCGCGTGGACGGACATGCCGTTGCCGACCACCCCTCCTCGTCCACCTCCTCCTCCTCATCTAATCTTCTCAAG
GAGGACTGGGTGCTGTGCAGGGTGTTCTACAAGAGCAGAACGGCTACACCAAGGGCAGTAGTCTCCGGTGAGGCTGCCGT
GTCACTGTCCGGTGAGCTCAGCTTGCCGCCGCCGCTGCCGCCGCCCGTTGCCCCCGCCGTCGTCGACGGCTACACCGGCG
GCGGCTATTACGAGCAAGACAGCTCAGCTGGGTACCACCACCACCACCACCACCGGCCGCCGCCGTCGGCAGCATTGCCG
TTCAAGGACCTGACGGACTTCAGGGACCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4160.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis