Browse Element(s) Details


Os.4555.1.S1_at

Description gb:AK066337.1
DB_XREF= gi:32976355
TID=Os.4555.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.4555 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013067H07, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013067H10, full insert sequence.
FL= gb:AK099667.1 gb:AK066337.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5284011/11Protein kinase domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52810OsAffx.4160.1.S1_at11/114+31220876..31224278No apical meristem protein, expressed
LOC_Os04g52820OsAffx.26580.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.57094.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.51708.1.S1_at10/114+31229488..31233456hypothetical protein
LOC_Os04g52830Os.4693.1.S1_at11/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52830OsAffx.18753.3.S1_x_at1/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52840Os.4555.1.S1_at11/114+31244047..31247345Protein kinase domain containing protein, expressed
LOC_Os04g52850Os.19751.1.S1_at11/114+31255319..31258257OTU-like cysteine protease family protein, expressed
LOC_Os04g52860Os.48708.1.S1_at11/114+31259192..31262939protein kinase family protein, putative, expressed
LOC_Os04g52870Os.253.1.S1_at10/114+31266309..31269483F-box family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006468biological_processprotein amino acid phosphorylation
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
GO:0016301molecular_functionkinase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4555.1.S1_at--251--2611Chr04:31244618..31244642 (25 bp)
AACGCCTGGCTGAGATCATCGATGC
LOC_Os04g52840
Os.4555.1.S1_at--128--4071Chr04:31244566..31244590 (25 bp)
CGAGGCATGCCGGTTCCTGAAGATT
LOC_Os04g52840
Os.4555.1.S1_at--448--5351Chr04:31244548..31244572 (25 bp)
GAAGATTGGCCTGCTATGCACACAG
LOC_Os04g52840
Os.4555.1.S1_at--589--10131Chr04:31244534..31244558 (25 bp)
TATGCACACAGGACGCAATGGCGCG
LOC_Os04g52840
Os.4555.1.S1_at--436--5971Chr04:31244469..31244493 (25 bp)
GAGAAGCACTTCTCGGTGCACCGGA
LOC_Os04g52840
Os.4555.1.S1_at--1157--5971Chr04:31244376..31244400 (25 bp)
GAGACAACACGGTCATCCAACATGA
LOC_Os04g52840
Os.4555.1.S1_at--257--2111Chr04:31244357..31244381 (25 bp)
ACATGAGATCGTTCAGCACCACTGA
LOC_Os04g52840
Os.4555.1.S1_at--405--5871Chr04:31244325..31244349 (25 bp)
GAGCCTTTCTCATCGTCAGAGACGC
LOC_Os04g52840
Os.4555.1.S1_at--773--4511Chr04:31244302..31244326 (25 bp)
GCCGACGCAGACGTCTATCTGAAAA
LOC_Os04g52840
Os.4555.1.S1_at--25--6511Chr04:31244114..31244138 (25 bp)
GATAGGCAGCGTATTGCTTCTCGAT
LOC_Os04g52840
Os.4555.1.S1_at--1143--10711Chr04:31244101..31244125 (25 bp)
TTGCTTCTCGATCTGGGTGTAAATA
LOC_Os04g52840
Target Sequence 
AACGCCTGGCTGAGATCATCGATGCTGACCTGGGGAATGACCTGGANGTCGACGAGGCATGCCGGTTCCTGAAGATTGGC
CTGCTATGCACACAGGACGCAATGGCGCGCCGCCCCAANCANGNAGCANCNGTCGTCAGGATGCTCACCGGGGAGAAGCA
CTTCTCGGTGCACCGGATCACCANGCCNGCCATGATCACCGACTTCGCCGACCTCAAGGTCAGCAGCAGCCANCNNAGAA
GGAGAACGAGACAACACGGTCATCCAACATGAGATCGTTCAGCACCACTGATGANACGGAGCCTTTCTCATCGTCAGAGA
CGCCGACGCAGACGTCTATCTGAAAAAAAAAAACAAGAAGAAGAACTGGAAATGTGGAGACAGGACTAGTGTTTTTTTTG
TGTTTGTATATTATTGCTCCGAAAGGGGATAGGATTACGTTCAATTTTTTTTTCTCTTTTTGGAGAGAGTTTCGTGTTTG
TTTGATTTTTGTGACGAGGAGATGTTTAAGATAGGCAGCGTATTGCTTCTCGATCTGGGTGTAAATA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4555.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis