Browse Element(s) Details


Os.4693.1.S1_at

Description gb:AK065137.1
DB_XREF= gi:32975155
TID=Os.4693.1
CNT=12
FEA=FLmRNA
TIER=FL
STK=3
UG=Os.4693 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013002A05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013002A05, full insert sequence.
FL= gb:AK065137.1 gb:AK061943.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5283011/11kelch repeat-containing F-box family protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52800OsAffx.14383.1.S1_at11/114+31215878..31216897hypothetical protein
LOC_Os04g52810OsAffx.4160.1.S1_at11/114+31220876..31224278No apical meristem protein, expressed
LOC_Os04g52820OsAffx.26580.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.57094.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.51708.1.S1_at10/114+31229488..31233456hypothetical protein
LOC_Os04g52830Os.4693.1.S1_at11/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52830OsAffx.18753.3.S1_x_at1/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52840Os.4555.1.S1_at11/114+31244047..31247345Protein kinase domain containing protein, expressed
LOC_Os04g52850Os.19751.1.S1_at11/114+31255319..31258257OTU-like cysteine protease family protein, expressed
LOC_Os04g52860Os.48708.1.S1_at11/114+31259192..31262939protein kinase family protein, putative, expressed
LOC_Os04g52870Os.253.1.S1_at10/114+31266309..31269483F-box family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.4693.1.S1_at--994--9251Chr04:31242372..31242396 (25 bp)
TCCTCCCCTAGTTGCTGTTGTGAAT
LOC_Os04g52830
Os.4693.1.S1_at--705--10071Chr04:31242470..31242494 (25 bp)
TAGTGAAGCCATTGCCAGTCAGAGC
LOC_Os04g52830
Os.4693.1.S1_at--611--3451Chr04:31242485..31242509 (25 bp)
CAGTCAGAGCTGACTCTTCCAATGG
LOC_Os04g52830
Os.4693.1.S1_at--1116--8591Chr04:31242555..31242579 (25 bp)
TGGTGGCCATAGAGTACCCCGTGGT
LOC_Os04g52830
Os.4693.1.S1_at--698--71Chr04:31242588..31242612 (25 bp)
ATTGCTGCATTCTTGGTGCCCTGAA
LOC_Os04g52830
Os.4693.1.S1_at--847--3831Chr04:31242629..31242653 (25 bp)
CTGACTGGGAAGTGCTCTCGGTGAA
LOC_Os04g52830
Os.4693.1.S1_at--673--1631Chr04:31242656..31242680 (25 bp)
AGCGTGCTGGTGTATTCGTTTATAA
LOC_Os04g52830
Os.4693.1.S1_at--128--7871Chr04:31242717..31242741 (25 bp)
GGTATAATCCGTATATGCCTCTTGT
LOC_Os04g52830
Os.4693.1.S1_at--544--251Chr04:31242729..31242753 (25 bp)
ATATGCCTCTTGTTTAGCAACCCAC
LOC_Os04g52830
Os.4693.1.S1_at--665--4171Chr04:31242816..31242840 (25 bp)
CCCTTTTCGTGGAGCTCTCAATGAA
LOC_Os04g52830
Os.4693.1.S1_at--1011--5911Chr04:31242860..31242884 (25 bp)
GAGCATTCAGTTCAGTTTACCTGGA
LOC_Os04g52830
Target Sequence 
TCCTCCCCTAGTTGCTGTTGTGAATAATCAGCTTTATGCAGCTGATCAGGCAACAAATGTGGTAAAGAAGTACGACAAAG
GAAATAACACCTGGAACATAGTGAAGCCATTGCCAGTCAGAGCTGACTCTTCCAATGGTTGGGGCCTAGCTTTCAAGGCA
TGTGGTGATAGATTGCTTGTTATTGGTGGCCATAGAGTACCCCGTGGTGAAGTAATATTGCTGCATTCTTGGTGCCCTGA
AGATGGGAATGGTGGTGCTGACTGGGAAGTGCTCTCGGTGAAGGAGCGTGCTGGTGTATTCGTTTATAACTGCGCAATAA
TGGGGTGCTGAATTACATTTCTTTCGGTATAATCCGTATATGCCTCTTGTTTAGCAACCCACCCATTTCTTGCTGCTGCT
TAGCTACCCCCTATAATGACCTGTAATTCAGAAAAATGACACCCCCCTTTTCGTGGAGCTCTCAATGAAATGTTTGGGAG
AGAGCATAGAGCATTCAGTTCAGTTTACCTGGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.4693.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis