Browse Element(s) Details


Os.19751.1.S1_at

Description gb:AK066247.1
DB_XREF= gi:32976265
TID=Os.19751.1
CNT=13
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.19751 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J013052H21, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J013052H21, full insert sequence.
FL= gb:AK066247.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5285011/11OTU-like cysteine protease family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52820OsAffx.26580.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.57094.1.S1_at11/114+31229488..31233456hypothetical protein
LOC_Os04g52820Os.51708.1.S1_at10/114+31229488..31233456hypothetical protein
LOC_Os04g52830Os.4693.1.S1_at11/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52830OsAffx.18753.3.S1_x_at1/114+31239893..31242955kelch repeat-containing F-box family protein, putative, expressed
LOC_Os04g52840Os.4555.1.S1_at11/114+31244047..31247345Protein kinase domain containing protein, expressed
LOC_Os04g52850Os.19751.1.S1_at11/114+31255319..31258257OTU-like cysteine protease family protein, expressed
LOC_Os04g52860Os.48708.1.S1_at11/114+31259192..31262939protein kinase family protein, putative, expressed
LOC_Os04g52870Os.253.1.S1_at10/114+31266309..31269483F-box family protein, putative, expressed
LOC_Os04g52880OsAffx.26581.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52880Os.7575.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52890OsAffx.14384.1.S1_at11/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52890Os.6755.2.S1_at5/114+31278203..31283426BAG domain-containing protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008234molecular_functioncysteine-type peptidase activity
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.19751.1.S1_at--571--5851Chr04:31257687..31257711 (25 bp)
GACCAGATCCCTTGGAGAGCTTCAA
LOC_Os04g52850
Os.19751.1.S1_at--610--6891Chr04:31257803..31257827 (25 bp)
GTATACTCGGGCTCATTTCCAGATG
LOC_Os04g52850
Os.19751.1.S1_at--117--6211Chr04:31257869..31257893 (25 bp)
GATGGCCCTAGCATTAGGTTGTCCT
LOC_Os04g52850
Os.19751.1.S1_at--1144--7911Chr04:31257885..31257909 (25 bp)
GGTTGTCCTATCACAGACATGCCTA
LOC_Os04g52850
Os.19751.1.S1_at--496--4451Chr04:31257905..31257929 (25 bp)
GCCTATGGTCTTGGTGAGCACTACA
LOC_Os04g52850
Os.19751.1.S1_at--432--8911Chr04:31257919..31257943 (25 bp)
TGAGCACTACAACTCGGTGGTTCCT
LOC_Os04g52850
Os.19751.1.S1_at--149--7731Chr04:31257934..31257958 (25 bp)
GGTGGTTCCTGCTTAGTTATCTAAA
LOC_Os04g52850
Os.19751.1.S1_at--526--9611Chr04:31258012..31258036 (25 bp)
TCATCCAGTGATAACCGTCTCTTAA
LOC_Os04g52850
Os.19751.1.S1_at--564--2971Chr04:31258040..31258064 (25 bp)
AATGGATGACTTGCTTACAGCTGCT
LOC_Os04g52850
Os.19751.1.S1_at--757--691Chr04:31258092..31258116 (25 bp)
ATGATGGTCGAGTCCTTGAGTGTAC
LOC_Os04g52850
Os.19751.1.S1_at--51--7171Chr04:31258174..31258198 (25 bp)
GTCTCATTATCTTAGTTTCCTGTTG
LOC_Os04g52850
Target Sequence 
GACCAGATCCCTTGGAGAGCTTCAAGAGGTACTGTGAGGAGGTTGAGTCAACTGCTGCTTGGGGTGGGCAACTTGAGCTT
GGTGCTCTAACCCACTGCCTGAAGAAGCNCATTGTTGTATACTCGGGCTCATTTCCAGATGTGGAAATGGGCAAAGAATA
CAAATTGGATTCAGGTGGTAAAGATGGCCCTAGCATTAGGTTGTCCTATCACAGACATGCCTATGGTCTTGGTGAGCACT
ACAACTCGGTGGTTCCTGCTTAGTTATCTAAAAGGGGAAAAAAAGAAATTTAACAGTCTTGGTCTCAGTATGATATGTTT
TCCAGTCATCCAGTGATAACCGTCTCTTAACACAATGGATGACTTGCTTACAGCTGCTGTTGTGTTTCCATCTTCTCGTC
AATCAATGATGGTCGAGTCCTTGAGTGTACCAAAGTTTTACCTGGGAATTTACTTCCCAAACAGTTTTGCTTGTAAAACT
GAAGTATGTCTCATTATCTTAGTTTCCTGTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.19751.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis