Browse Element(s) Details


OsAffx.14384.1.S1_at

Description tigr:9632.m05127
TID=OsAffx.14384.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5289011/11BAG domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52850Os.19751.1.S1_at11/114+31255319..31258257OTU-like cysteine protease family protein, expressed
LOC_Os04g52860Os.48708.1.S1_at11/114+31259192..31262939protein kinase family protein, putative, expressed
LOC_Os04g52870Os.253.1.S1_at10/114+31266309..31269483F-box family protein, putative, expressed
LOC_Os04g52880OsAffx.26581.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52880Os.7575.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52890OsAffx.14384.1.S1_at11/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52890Os.6755.2.S1_at5/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52900Os.5631.1.S1_s_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52900OsAffx.4161.1.S1_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52910OsAffx.14385.1.S1_at11/114+31300186..31300842hypothetical protein
LOC_Os04g52920Os.51021.1.S1_at11/114+31305695..31308804Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006915biological_processapoptosis
GO:0042981biological_processregulation of apoptosis
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14384.1.S1_at--1067--2731Chr04:31280871..31280895 (25 bp)
AAGAACAGGTCCAAGCTCTACCTCG
LOC_Os04g52890
OsAffx.14384.1.S1_at--346--2771Chr04:31280940..31280964 (25 bp)
AAGAGCGCCAAGATCGAGACCGCCA
LOC_Os04g52890
OsAffx.14384.1.S1_at--305--8411Chr04:31280976..31281000 (25 bp)
GGCGCCATCGCCTTGGAGGTCGACA
LOC_Os04g52890
OsAffx.14384.1.S1_at--737--5611Chr04:31280997..31281016 (20 bp)
GACAAGCTCGCCGATCAGGTAAGGA
LOC_Os04g52890
OsAffx.14384.1.S1_at--100--5971Chr04:31281701..31281725 (25 bp)
GAGAAGTCGATCACCCGTGGGAGCA
LOC_Os04g52890
OsAffx.14384.1.S1_at--448--9031Chr04:31281738..31281762 (25 bp)
TGCAGATCACGACGCTGATCGAGCT
LOC_Os04g52890
OsAffx.14384.1.S1_at--587--6391Chr04:31281754..31281778 (25 bp)
GATCGAGCTGCTGATGCGGCTTGCT
LOC_Os04g52890
OsAffx.14384.1.S1_at--1056--591Chr04:31281767..31281791 (25 bp)
ATGCGGCTTGCTGTGAAGCTGGACA
LOC_Os04g52890
OsAffx.14384.1.S1_at--547--7991Chr04:31283023..31283047 (25 bp)
GGATGTGCTCAAGATCTCCAACGCG
LOC_Os04g52890
OsAffx.14384.1.S1_at--572--3251Chr04:31283041..31283065 (25 bp)
CAACGCGCGGTTGCAGAATGTGATA
LOC_Os04g52890
OsAffx.14384.1.S1_at--890--5831Chr04:31283071..31283095 (25 bp)
GACCAAATGGGAGACGTTCGATGCT
LOC_Os04g52890
Target Sequence 
AAGAACAGGTCCAAGCTCTACCTCGCCGAGGACCCGACCAGCGTCGAGCGGCGCTACATCGAGCGCCAGAAGAGCGCCAA
GATCGAGACCGCCAACCGCGCCATTGGCGCCATCGCCTTGGAGGTCGACAAGCTCGCCGATCAGGTAAGGAGCATCGAGA
AGTCGATCACCCGTGGGAGCAAGGTCGCCGAGGTGCAGATCACGACGCTGATCGAGCTGCTGATGCGGCTTGCTGTGAAG
CTGGACAGCATACACGCTGAAGGGGACTCGTCTTCCCAGAAGAACATTCAGGCGAAGAGGGTGCAGAAATGCGTGGAGAC
GCTGGATGTGCTCAAGATCTCCAACGCGCGGTTGCAGAATGTGATAGTGACGACCAAATGGGAGACGTTCGATGCT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14384.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis