Browse Element(s) Details


Os.51021.1.S1_at

Description gb:AK060209.1
DB_XREF= gi:32970227
TID=Os.51021.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.51021 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:001-002-B03, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-002-B03, full insert sequence.
FL= gb:AK060209.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5292011/11Remorin, C-terminal region family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52890OsAffx.14384.1.S1_at11/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52890Os.6755.2.S1_at5/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52900Os.5631.1.S1_s_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52900OsAffx.4161.1.S1_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52910OsAffx.14385.1.S1_at11/114+31300186..31300842hypothetical protein
LOC_Os04g52920Os.51021.1.S1_at11/114+31305695..31308804Remorin, C-terminal region family protein, expressed
LOC_Os04g52930OsAffx.26582.1.S1_at11/114+31309078..31310437hypothetical protein
LOC_Os04g52940Os.52314.1.S2_x_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.8784.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S2_at9/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.38157.1.S1_s_at1/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52950Os.50496.1.S1_at11/114+31322937..31323695Nitrate-induced NOI protein, expressed
LOC_Os04g52960Os.23208.1.S1_at11/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52960Os.27035.2.S1_s_at1/114+31325067..31332146RNA recognition motif family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0003677molecular_functionDNA binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.51021.1.S1_at--788--5631Chr04:31308395..31308419 (25 bp)
GACACGGCGTTTAGCTGAAGAGAAA
LOC_Os04g52920
Os.51021.1.S1_at--397--5551Chr04:31308416..31308440 (25 bp)
GAAACGAGCCTCAGCCAATGCAAGG
LOC_Os04g52920
Os.51021.1.S1_at--735--3291Chr04:31308457..31308481 (25 bp)
CAAAGGCGGTTCACAAGGCTGAGCT
LOC_Os04g52920
Os.51021.1.S1_at--680--1611Chr04:31308478..31308502 (25 bp)
AGCTGATTCGCCAGACAGGACGAGT
LOC_Os04g52920
Os.51021.1.S1_at--186--1851Chr04:31308497..31308521 (25 bp)
ACGAGTTCCAGGGTCATGTATCCTA
LOC_Os04g52920
Os.51021.1.S1_at--212--7131Chr04:31308509..31308533 (25 bp)
GTCATGTATCCTATGCTGCAGTGGT
LOC_Os04g52920
Os.51021.1.S1_at--595--1092Chr04:31308528..31308552 (25 bp)
AGTGGTTGCTTCTGTCAACACTAGT
LOC_Os04g52920
Os.51021.1.S1_at--591--6731Chr04:31308606..31308630 (25 bp)
GTTCTATAATCAGCATTCCTTGGTT
LOC_Os04g52920
Os.51021.1.S1_at--673--631Chr04:31308710..31308734 (25 bp)
ATGCTTACATTTGCTTGGTCGGCTA
LOC_Os04g52920
Os.51021.1.S1_at--376--8571Chr04:31308725..31308749 (25 bp)
TGGTCGGCTACTCGGTTAAAGAACA
LOC_Os04g52920
Os.51021.1.S1_at--758--5491Chr04:31308745..31308769 (25 bp)
GAACACTTGGTTGTTGCTCAACGAA
LOC_Os04g52920
Target Sequence 
GACACGGCGTTTAGCTGAAGAGAAACGAGCCTCAGCCAATGCAAGGATGAACCAACAAGCAGCAAAGGCGGTTCACAAGG
CTGAGCTGATTCGCCAGACAGGACGAGTTCCAGGGTCATGTATCCTATGCTGCAGTGGTTGCTTCTGTCAACACTAGTGT
ATGCTTGACAATTAGGGAGTTAAATATGGTCGTGAAAAATCTAAACCCCATGTTCTATAATCAGCATTCCTTGGTTTTAG
TATGGAAAGGAATGTCTGATACTTTGATTAGGTATTCAGATGTACAAATTCTTGCTTGTCATAAAAGTCAATCCAATGCT
TACATTTGCTTGGTCGGCTACTCGGTTAAAGAACACTTGGTTGTTGCTCAACGAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.51021.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis