Browse Element(s) Details


Os.50496.1.S1_at

Description gb:AK121449.1
DB_XREF= gi:37991072
TID=Os.50496.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.50496 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J023142G04, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J023142G04, full insert sequence.
FL= gb:AK121449.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5295011/11Nitrate-induced NOI protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52910OsAffx.14385.1.S1_at11/114+31300186..31300842hypothetical protein
LOC_Os04g52920Os.51021.1.S1_at11/114+31305695..31308804Remorin, C-terminal region family protein, expressed
LOC_Os04g52930OsAffx.26582.1.S1_at11/114+31309078..31310437hypothetical protein
LOC_Os04g52940Os.52314.1.S2_x_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.8784.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S2_at9/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.38157.1.S1_s_at1/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52950Os.50496.1.S1_at11/114+31322937..31323695Nitrate-induced NOI protein, expressed
LOC_Os04g52960Os.23208.1.S1_at11/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52960Os.27035.2.S1_s_at1/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52970Os.22807.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970Os.18578.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970OsAffx.14387.1.S1_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52980OsAffx.26583.1.S1_at11/114+31340744..31341013expressed protein
LOC_Os04g52990Os.51611.1.S1_at11/114+31343331..31343904expressed protein
LOC_Os04g53000OsAffx.14387.3.S1_at11/114+31346084..31347211Leucine Rich Repeat family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0010167biological_processresponse to nitrate
Probe Info

Probe NameHit(s)LocationSequenceTIGR Locus
Os.50496.1.S1_at--81--9371Chr04:31323639..31323663 (25 bp)
TCTGCTGGTTAAAGGCCTTTTTCTC
LOC_Os04g52950
Os.50496.1.S1_at--423--6131Chr04:31323397..31323421 (25 bp)
GAGGGCTTCACGGTGATATTCCAGA
LOC_Os04g52950
Os.50496.1.S1_at--430--10211Chr04:31323381..31323405 (25 bp)
TATTCCAGAAGGCTCGCGACGACAA
LOC_Os04g52950
Os.50496.1.S1_at--706--1931Chr04:31323291..31323315 (25 bp)
ACGGCGGCTACAGGCCCGAATTCAA
LOC_Os04g52950
Os.50496.1.S1_at--38--3991Chr04:31323119..31323143 (25 bp)
CGGGTGTTGATTTTCTGGCTTCTGC
LOC_Os04g52950
Os.50496.1.S1_at--1050--10591Chr04:31323100..31323124 (25 bp)
TTCTGCTGCTGTTTTTTCGGATGAG
LOC_Os04g52950
Os.50496.1.S1_at--900--6211Chr04:31323078..31323102 (25 bp)
GAGGCGGATCGCAATTATTCACAAT
LOC_Os04g52950
Os.50496.1.S1_at--501--3131Chr04:31323066..31323090 (25 bp)
AATTATTCACAATTGCCGCACCAGA
LOC_Os04g52950
Os.50496.1.S1_at--292--10691Chr04:31323054..31323078 (25 bp)
TTGCCGCACCAGAAGTATTCCTGAT
LOC_Os04g52950
Os.50496.1.S1_at--360--7431Chr04:31322992..31323016 (25 bp)
GTGTTTCTGTGATCATGGTGTTCGA
LOC_Os04g52950
Os.50496.1.S1_at--158--8811Chr04:31322974..31322998 (25 bp)
TGTTCGATCTCTTCACGTTTATTTG
LOC_Os04g52950
Target Sequence
TCTGCTGGTTAAAGGCCTTTTTCTCCCTCCTCCCTCGCGTCGTCCCCGGCGGCCGCCCGGGCGTCATTCTCGTCTCTCGG
CCACCATGACGACGATGGACAAGGGCCGGGCGCTGCCCAAGTTTGGGGAGTGGGACGTGAAGAATCCGGCGTCGGCGGAG
GGCTTCACGGTGATATTCCAGAAGGCTCGCGACGACAAGAAGACGACCGGCCCCGGGAACGCCAGGGTGGGGATACCGCC
GGCCTTCCGGAGCACCGACGACGACGGCGGCTACAGGCCCGAATTCAAGCCCGCCGAGAGCTACCAGCAACACACGCCGC
CCAAGCGCGTCAAGAAGAAGTGGGCATTCTGCGCCGGGTGTTGATTTTCTGGCTTCTGCTGCTGTTTTTTCGGATGAGGC
GGATCGCAATTATTCACAATTGCCGCACCAGAAGTATTCCTGATGGGAGCAAGAGCAAAATAGGAGAGGAGGGGGGGGGG
GGTGTTTCTGTGATCATGGTGTTCGATCTCTTCACGTTTATTTG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.50496.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis