Browse Element(s) Details


Os.23208.1.S1_at

Description gb:AK063918.1
DB_XREF= gi:32973936
TID=Os.23208.1
CNT=8
FEA=FLmRNA
TIER=FL
STK=2
UG=Os.23208 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033129G11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:001-123-B06, full insert sequence.
FL= gb:AK103446.1 gb:AK063918.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5296011/11RNA recognition motif family protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52910OsAffx.14385.1.S1_at11/114+31300186..31300842hypothetical protein
LOC_Os04g52920Os.51021.1.S1_at11/114+31305695..31308804Remorin, C-terminal region family protein, expressed
LOC_Os04g52930OsAffx.26582.1.S1_at11/114+31309078..31310437hypothetical protein
LOC_Os04g52940Os.52314.1.S2_x_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.8784.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S2_at9/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.38157.1.S1_s_at1/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52950Os.50496.1.S1_at11/114+31322937..31323695Nitrate-induced NOI protein, expressed
LOC_Os04g52960Os.23208.1.S1_at11/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52960Os.27035.2.S1_s_at1/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52970Os.22807.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970Os.18578.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970OsAffx.14387.1.S1_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52980OsAffx.26583.1.S1_at11/114+31340744..31341013expressed protein
LOC_Os04g52990Os.51611.1.S1_at11/114+31343331..31343904expressed protein
LOC_Os04g53000OsAffx.14387.3.S1_at11/114+31346084..31347211Leucine Rich Repeat family protein, expressed
LOC_Os04g53010Os.14919.1.S1_at4/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53010OsAffx.29313.1.S1_at1/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53020NANA4+31356564..31357381GRF zinc finger family protein

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Gene Ontology Classification
GO idTypeName
GO:0003676molecular_functionnucleic acid binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.23208.1.S1_at--113--6551Chr04:31331472..31331496 (25 bp)
GATTTTGCGGACAACGGTTCCTTGT
LOC_Os04g52960
Os.23208.1.S1_at--275--8931Chr04:31331522..31331546 (25 bp)
TGACCTCGGTGGATACAGCTTGTAT
LOC_Os04g52960
Os.23208.1.S1_at--149--8411Chr04:31331560..31331584 (25 bp)
GGCCTAGGCCCGATAACAACAGAGA
LOC_Os04g52960
Os.23208.1.S1_at--909--7671Chr04:31331726..31331750 (25 bp)
GGGTACACCGTTCAAGCAGAGCGCT
LOC_Os04g52960
Os.23208.1.S1_at--271--5872Chr04:31341024..31341048 (25 bp)
GAGCCGATTTTGTTCTAGTACTGTA
NONE
Os.23208.1.S1_at--382--10051Chr04:31331941..31331965 (25 bp)
TAGTACTGTAGTAATCTCCATCCCC
LOC_Os04g52960
Os.23208.1.S1_at--87--271Chr04:31331972..31331996 (25 bp)
ATATGCGATTCTAGTGAGCCGTGAA
LOC_Os04g52960
Os.23208.1.S1_at--467--9011Chr04:31331993..31332017 (25 bp)
TGAATTGGCTACCTCCGGACTGTTA
LOC_Os04g52960
Os.23208.1.S1_at--871--8111Chr04:31332009..31332033 (25 bp)
GGACTGTTACATTCTAGCCGTGTTA
LOC_Os04g52960
Os.23208.1.S1_at--659--7391Chr04:31332058..31332082 (25 bp)
GTGTTGGTAAATTTGCCCGACAGAT
LOC_Os04g52960
Os.23208.1.S1_at--30--8191Chr04:31332094..31332118 (25 bp)
GGAACCTCTTGACTTCGTAATCATT
LOC_Os04g52960
Target Sequence 
GATTTTGCGGACAACGGTTCCTTGTCGAAAGCATACGAACTGAATGGATCTGACCTCGGTGGATACAGCTTGTATGTTGA
TGAAGCGAGGCCTAGGCCCGATAACAACAGAGAGGGTGGCTTCAGCGGTGGAAGAGACTTTAACAGCAGTGGGAGAGGAG
GAAGACGTGGTGGACGTGGTGATGGTAGCCGTGGGCGCGGTGACCGTGGACGTGGTAGAGGCTTTGGTAGGGGTGACAGG
GGCCATGGTGGACGGGGTACACCGTTCAAGCAGAGCGCTGGTACACCTAGTGCAGGAAAGAAGACAACATTCGGTGACGA
CGACTAGACGAACAATTTGAGCCGATTTTGTTCTAGTACTGTAGTAATCTCCATCCCCCCTAATATATGCGATTCTAGTG
AGCCGTGAATTGGCTACCTCCGGACTGTTACATTCTAGCCGTGTTATGTACTTTGTTGGCAGTTGGGACCGTGTTGGTAA
ATTTGCCCGACAGATTTGGCAATTTTGGAACCTCTTGACTTCGTAATCATT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.23208.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis