Browse Element(s) Details


Os.18578.1.S1_s_at

Description gb:AU030779
DB_XREF= gi:3766669
DB_XREF=AU030779
CLONE=E60225_2Z
TID=Os.18578.1
CNT=1
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.18578 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with weak similarity to protein ref:NP_188065.1 (A.thaliana) disease resistance protein, putative (Arabidopsis thaliana)
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5297011/11NB-ARC domain containing protein, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52930OsAffx.26582.1.S1_at11/114+31309078..31310437hypothetical protein
LOC_Os04g52940Os.52314.1.S2_x_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.8784.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S2_at9/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.38157.1.S1_s_at1/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52950Os.50496.1.S1_at11/114+31322937..31323695Nitrate-induced NOI protein, expressed
LOC_Os04g52960Os.23208.1.S1_at11/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52960Os.27035.2.S1_s_at1/114+31325067..31332146RNA recognition motif family protein, expressed
LOC_Os04g52970Os.22807.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970Os.18578.1.S1_s_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52970OsAffx.14387.1.S1_at11/114+31334008..31339348NB-ARC domain containing protein, expressed
LOC_Os04g52980OsAffx.26583.1.S1_at11/114+31340744..31341013expressed protein
LOC_Os04g52990Os.51611.1.S1_at11/114+31343331..31343904expressed protein
LOC_Os04g53000OsAffx.14387.3.S1_at11/114+31346084..31347211Leucine Rich Repeat family protein, expressed
LOC_Os04g53010Os.14919.1.S1_at4/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53010OsAffx.29313.1.S1_at1/114+31350225..31356143Transposable element protein, putative, MuDR
LOC_Os04g53020NANA4+31356564..31357381GRF zinc finger family protein
LOC_Os04g53030OsAffx.14389.1.S1_at11/114+31358821..31364811NB-ARC domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006952biological_processdefense response
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.18578.1.S1_s_at--849--3271Chr04:31334739..31334763 (25 bp)
CAAACGTGACATTTCTAAGAGGATC
LOC_Os04g52970
Os.18578.1.S1_s_at--802--10511Chr04:31334816..31334840 (25 bp)
TTCAGCTAGAGATCCCATGCCGAGG
LOC_Os04g52970
Os.18578.1.S1_s_at--801--10031Chr04:31334822..31334846 (25 bp)
TAGAGATCCCATGCCGAGGTTTGAC
LOC_Os04g52970
Os.18578.1.S1_s_at--31--551Chr04:31334827..31334851 (25 bp)
ATCCCATGCCGAGGTTTGACATCAA
LOC_Os04g52970
Os.18578.1.S1_s_at--661--9171Chr04:31334833..31334857 (25 bp)
TGCCGAGGTTTGACATCAAATCAGA
LOC_Os04g52970
Os.18578.1.S1_s_at--336--9251Chr04:31334898..31334922 (25 bp)
TCCTATTGAACCCAAGGTGTATGGG
LOC_Os04g52970
Os.18578.1.S1_s_at--367--1071Chr04:31334966..31334990 (25 bp)
AGGGATCTAGTGATCTCCTTGTCAT
LOC_Os04g52970
Os.18578.1.S1_s_at--449--1111Chr04:31334974..31334998 (25 bp)
AGTGATCTCCTTGTCATACCAATAG
LOC_Os04g52970
Os.18578.1.S1_s_at--627--9491Chr04:31334979..31335003 (25 bp)
TCTCCTTGTCATACCAATAGTTGGC
LOC_Os04g52970
Os.18578.1.S1_s_at--1137--4851Chr04:31335031..31335055 (25 bp)
GCTAGATTTGTATACCGAGATCAAA
LOC_Os04g52970
Os.18578.1.S1_s_at--1015--811Chr04:31335084..31335108 (25 bp)
ATGGATTTGTGTATCCACTAACTTC
LOC_Os04g52970
Target Sequence 
CAAACGTGACATTTCTAAGAGGATCAATAGAATNGTGAACAATTTGCNGAAAACTGGCAATTCTGTTNGTGGGGTTCTTC
AGCTAGAGATCCCATGCCGAGGTTTGACATCAAATCAGAGGCACAGAATGGCCNGGAACACACGCCTGACAACTTCTGTT
CCTATTGAACCCAAGGTGTATGGGNGAGATGCAGATAAGGACAGGATAATAGAGATGTTAATAAATGAGGGATCTAGTGA
TCTCCTTGTCATACCAATAGTTGGCATTGGTGGTATTGGAAAGACAACACTTGCTAGATTTGTATACCGAGATCAAAGGA
TTATTGATCATTTTGATTTGCAAATATGGATTTGTGTATCCACTAACTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.18578.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis