Browse Element(s) Details


OsAffx.4161.1.S1_at

Description tigr:9632.m05128
TID=OsAffx.4161.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=ABC transporter transmembrane region, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5290011/11ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52860Os.48708.1.S1_at11/114+31259192..31262939protein kinase family protein, putative, expressed
LOC_Os04g52870Os.253.1.S1_at10/114+31266309..31269483F-box family protein, putative, expressed
LOC_Os04g52880OsAffx.26581.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52880Os.7575.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52890OsAffx.14384.1.S1_at11/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52890Os.6755.2.S1_at5/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52900Os.5631.1.S1_s_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52900OsAffx.4161.1.S1_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52910OsAffx.14385.1.S1_at11/114+31300186..31300842hypothetical protein
LOC_Os04g52920Os.51021.1.S1_at11/114+31305695..31308804Remorin, C-terminal region family protein, expressed
LOC_Os04g52930OsAffx.26582.1.S1_at11/114+31309078..31310437hypothetical protein
LOC_Os04g52940Os.52314.1.S2_x_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.8784.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S2_at9/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.38157.1.S1_s_at1/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed

Select all/Clear all

Gene Ontology Classification
GO idTypeName
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.4161.1.S1_at--1154--531Chr04:31284171..31284195 (25 bp)
ATCCCTGAAGCCCTGTTGCAGAGTA
LOC_Os04g52900
OsAffx.4161.1.S1_at--605--9311Chr04:31284170..31284194 (25 bp)
TCCCTGAAGCCCTGTTGCAGAGTAG
LOC_Os04g52900
OsAffx.4161.1.S1_at--1144--4171Chr04:31284169..31284193 (25 bp)
CCCTGAAGCCCTGTTGCAGAGTAGA
LOC_Os04g52900
OsAffx.4161.1.S1_at--900--4271Chr04:31284168..31284192 (25 bp)
CCTGAAGCCCTGTTGCAGAGTAGAT
LOC_Os04g52900
OsAffx.4161.1.S1_at--391--3851Chr04:31284167..31284191 (25 bp)
CTGAAGCCCTGTTGCAGAGTAGATT
LOC_Os04g52900
OsAffx.4161.1.S1_at--514--8991Chr04:31284166..31284190 (25 bp)
TGAAGCCCTGTTGCAGAGTAGATTT
LOC_Os04g52900
OsAffx.4161.1.S1_at--929--5411Chr04:31284165..31284189 (25 bp)
GAAGCCCTGTTGCAGAGTAGATTTG
LOC_Os04g52900
OsAffx.4161.1.S1_at--920--4531Chr04:31284162..31284186 (25 bp)
GCCCTGTTGCAGAGTAGATTTGGAG
LOC_Os04g52900
OsAffx.4161.1.S1_at--889--4271Chr04:31284160..31284184 (25 bp)
CCTGTTGCAGAGTAGATTTGGAGCT
LOC_Os04g52900
OsAffx.4161.1.S1_at--931--1331Chr04:31284152..31284176 (25 bp)
AGAGTAGATTTGGAGCTGTAGGCTT
LOC_Os04g52900
OsAffx.4161.1.S1_at--47--6951Chr04:31284149..31284173 (25 bp)
GTAGATTTGGAGCTGTAGGCTTTTC
LOC_Os04g52900
Target Sequence 
ATCCCTGAAGCCCTGTTGCAGAGTAGATTTGGAGCTGTAGGCTTTTC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.4161.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis