Browse Element(s) Details


OsAffx.26581.1.S1_at

Description tigr:9632.m05126
TID=OsAffx.26581.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5288011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52850Os.19751.1.S1_at11/114+31255319..31258257OTU-like cysteine protease family protein, expressed
LOC_Os04g52860Os.48708.1.S1_at11/114+31259192..31262939protein kinase family protein, putative, expressed
LOC_Os04g52870Os.253.1.S1_at10/114+31266309..31269483F-box family protein, putative, expressed
LOC_Os04g52880OsAffx.26581.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52880Os.7575.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52890OsAffx.14384.1.S1_at11/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52890Os.6755.2.S1_at5/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52900Os.5631.1.S1_s_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52900OsAffx.4161.1.S1_at11/114+31283884..31295251ABC transporter, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.26581.1.S1_at--648--6231Chr04:31273820..31273844 (25 bp)
GATGGCTTCCTTCTTCGGCAGCAAG
LOC_Os04g52880
OsAffx.26581.1.S1_at--317--10671Chr04:31273826..31273850 (25 bp)
TTCCTTCTTCGGCAGCAAGCCCGAG
LOC_Os04g52880
OsAffx.26581.1.S1_at--1010--10531Chr04:31273830..31273854 (25 bp)
TTCTTCGGCAGCAAGCCCGAGGCCG
LOC_Os04g52880
OsAffx.26581.1.S1_at--223--2611Chr04:31274599..31274623 (25 bp)
AACCGACGAGAGAAATGAAGCTGCA
LOC_Os04g52880
OsAffx.26581.1.S1_at--267--9871Chr04:31274633..31274657 (25 bp)
TACAGTGGCAGAATCAAGCGGCTTC
LOC_Os04g52880
OsAffx.26581.1.S1_at--209--8511Chr04:31274638..31274662 (25 bp)
TGGCAGAATCAAGCGGCTTCTGCAT
LOC_Os04g52880
OsAffx.26581.1.S1_at--415--4271Chr04:31274669..31274693 (25 bp)
CCTGCTGCAGCGAGTGCAGGCTGCA
LOC_Os04g52880
OsAffx.26581.1.S1_at--783--2771Chr04:31274943..31274967 (25 bp)
AAGAGCGAGAAGACATTCAGGGTCT
LOC_Os04g52880
OsAffx.26581.1.S1_at--898--1591Chr04:31274983..31275007 (25 bp)
AGCTCCAGTTTCACTCTTTCTAGAG
LOC_Os04g52880
OsAffx.26581.1.S1_at--400--9231Chr04:31274986..31275010 (25 bp)
TCCAGTTTCACTCTTTCTAGAGCTG
LOC_Os04g52880
OsAffx.26581.1.S1_at--563--6831Chr04:31274990..31275014 (25 bp)
GTTTCACTCTTTCTAGAGCTGGAGC
LOC_Os04g52880
Target Sequence 
GATGGCTTCCTTCTTCGGCAGCAAGCCCGAGGCCGCCGAGCTCCCGGAGGCGCTCGACGCCTCCAATGCCGCCGCCGCCA
CCGCCAAGCCGGAGGCCGCGTCGGCGATCCCCAGAGCCACCGCCACCATCACCGCGTCGGCGTCGTCGGCGCCGCCTCGC
AGATCCGTGTCCGTGGCCGCCGGCGTGGCGTGCGCCGTCGCGGCGGTGGCGGTGGTCGGCGTCGCGGTCGCCGTGGCGTA
CGTGGTGCGCGCCAGGCGCGCCGCGCGGCGCGAGTCGGAGGTCCGGCTCGGCTCGCCGAAACCGACGAGAGAAATGAAGC
TGCAGAGCTGGACTACAGTGGCAGAATCAAGCGGCTTCTGCATGCGGTCCCTGCTGCAGCGAGTGCAGGCTGCAGGAAAA
GAGCGAGAAGACATTCAGGGTCTGTTTAGCACAGCTCCAGCTCCAGTTTCACTCTTTCTAGAGCTGGAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.26581.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis