Browse Element(s) Details


Os.6755.2.S1_at

Description gb:AK106978.1
DB_XREF= gi:32992187
TID=Os.6755.2
CNT=3
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.6755 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:002-119-H05, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:002-119-H05, full insert sequence.
FL= gb:AK106978.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g528905/11BAG domain-containing protein, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52850Os.19751.1.S1_at11/114+31255319..31258257OTU-like cysteine protease family protein, expressed
LOC_Os04g52860Os.48708.1.S1_at11/114+31259192..31262939protein kinase family protein, putative, expressed
LOC_Os04g52870Os.253.1.S1_at10/114+31266309..31269483F-box family protein, putative, expressed
LOC_Os04g52880OsAffx.26581.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52880Os.7575.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52890OsAffx.14384.1.S1_at11/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52890Os.6755.2.S1_at5/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52900Os.5631.1.S1_s_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52900OsAffx.4161.1.S1_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52910OsAffx.14385.1.S1_at11/114+31300186..31300842hypothetical protein
LOC_Os04g52920Os.51021.1.S1_at11/114+31305695..31308804Remorin, C-terminal region family protein, expressed

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Gene Ontology Classification
GO idTypeName
GO:0006915biological_processapoptosis
GO:0042981biological_processregulation of apoptosis
GO:0005739cellular_componentmitochondrion
GO:0005515molecular_functionprotein binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.6755.2.S1_at--409--1511Chr04:31283115..31283136 (22 bp)
AGCAGCTGTTCGACTGAAGGTGAAA
LOC_Os04g52890
Os.6755.2.S1_at--399--1431Chr04:31283143..31283167 (25 bp)
AGAAGCCCAGAAATGCATAGCAGTA
LOC_Os04g52890
Os.6755.2.S1_at--883--6631Chr04:31283219..31283243 (25 bp)
GTTGTTCATGTCAGTTTTTGTGGCA
LOC_Os04g52890
Os.6755.2.S1_at--416--5111Chr04:31283310..31283334 (25 bp)
GAAAACCCCACTGTTAATTGTCTGT
LOC_Os04g52890
Os.6755.2.S1_at--20--7191Chr04:31283329..31283353 (25 bp)
GTCTGTAATCATCGTCGTCATACCT
LOC_Os04g52890
Os.6755.2.S1_at--684--8791Chr04:31283411..31283435 (25 bp)
TGTTCTTTCTTTCTGTATCCTGTCT
NONE
Os.6755.2.S1_at--147--571Chr04:31283427..31283451 (25 bp)
ATCCTGTCTTGTCGAGTGAGAGCCC
NONE
Os.6755.2.S1_at--186--5151Chr04:31283523..31283547 (25 bp)
GCAACAGTTTATGGCTCACAGACAT
NONE
Os.6755.2.S1_at--1097--8531Chr04:31283547..31283571 (25 bp)
TGGAGCCCTCTCTTTCAAGAAGAAA
NONE
Os.6755.2.S1_at--932--5211Chr04:31283568..31283592 (25 bp)
GAAACGAAAAAGAGCTCCCTGAATT
NONE
Os.6755.2.S1_at--1065--9291Chr04:31283583..31283607 (25 bp)
TCCCTGAATTTGATGGTGGCGAAGC
NONE
Target Sequence 
AGCAGCTGTTCGACTGAAGGTGAAAAACAAAAGAAGCCCAGAAATGCATAGCAGTACAAAAAACAATGGTGTTGGTTTTG
TTTNCGTTTGGTTGGTTCGTATCTTGAGTTGTTCATGTCAGTTTTTGTGGCATGCATGCAAAATTGGTTGTAATAATGGT
TGGTGANCTGGTAGATTAAATTAGGTGGTAGAGGAACCGAAAACCCCACTGTTAATTGTCTGTAATCATCGTCGTCATAC
CTCTCCCGACTCGATCGATTCATGGATGGATCAGTCCAATAAAAGGAAANCAGCAGCACTGTTCTTTCTTTCTGTATCCT
GTCTTGTCGAGTGAGAGCCCTGGTGGTGATGATCGATTGTTCAGAGAACAGCTGATTCAGAAGGAGAAGATTGTGCAGGT
TTGTGTCTGAAGCAACAGTTTATGGCTCACAGACATGGAGCCCTCTCTTTCAAGAAGAAACGAAAAAGAGCTCCCTGAAT
TTGATGGTGGCGAAGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.6755.2.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis