Browse Element(s) Details


Os.5631.1.S1_s_at

Description gb:CB667756
DB_XREF= gi:29671481
DB_XREF=OSJNEd15D22.r
CLONE=OSJNEd15D22
TID=Os.5631.1
CNT=24
FEA=EST
TIER=ConsEnd
STK=1
UG=Os.5631 (NCBI UniGene Cluster)
UG_TITLE=Transcribed sequence with moderate similarity to protein ref:NP_181013.1 (A.thaliana) ABC transporter
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5290011/11ABC transporter, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g52860Os.48708.1.S1_at11/114+31259192..31262939protein kinase family protein, putative, expressed
LOC_Os04g52870Os.253.1.S1_at10/114+31266309..31269483F-box family protein, putative, expressed
LOC_Os04g52880OsAffx.26581.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52880Os.7575.1.S1_at11/114+31273689..31275106expressed protein
LOC_Os04g52890OsAffx.14384.1.S1_at11/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52890Os.6755.2.S1_at5/114+31278203..31283426BAG domain-containing protein, putative, expressed
LOC_Os04g52900Os.5631.1.S1_s_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52900OsAffx.4161.1.S1_at11/114+31283884..31295251ABC transporter, putative, expressed
LOC_Os04g52910OsAffx.14385.1.S1_at11/114+31300186..31300842hypothetical protein
LOC_Os04g52920Os.51021.1.S1_at11/114+31305695..31308804Remorin, C-terminal region family protein, expressed
LOC_Os04g52930OsAffx.26582.1.S1_at11/114+31309078..31310437hypothetical protein
LOC_Os04g52940Os.52314.1.S2_x_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.8784.1.S1_at11/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.52314.1.S2_at9/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed
LOC_Os04g52940Os.38157.1.S1_s_at1/114+31312921..31322856SIT4 phosphatase-associated family protein, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0008559molecular_functionxenobiotic-transporting ATPase activity
GO:0042626molecular_functionATPase activity, coupled to transmembrane movement of substances
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.5631.1.S1_s_at--264--391Chr04:31284772..31284796 (25 bp)
ATCACTCTACAGAATGTCCTCGAAG
LOC_Os04g52900
Os.5631.1.S1_s_at--197--2171Chr04:31284721..31284745 (25 bp)
ACACTCGCTCAGTATGAGGTTCCAT
LOC_Os04g52900
Os.5631.1.S1_s_at--669--7731Chr04:31284687..31284711 (25 bp)
GGTGGTCATCGCTATACAAAGTCAT
LOC_Os04g52900
Os.5631.1.S1_s_at--342--5311Chr04:31284287..31284309 (23 bp)
GAAGGACTTGCCATGATGAGCCGAT
LOC_Os04g52900
Os.5631.1.S1_s_at--654--31Chr04:31284264..31284288 (25 bp)
ATTGGGTCGCAACCGTCTACAGCAA
LOC_Os04g52900
Os.5631.1.S1_s_at--1132--771Chr04:31284188..31284212 (25 bp)
ATGTGCAAGCATGACTGATCCCTGA
LOC_Os04g52900
Os.5631.1.S1_s_at--1144--3871Chr04:31284137..31284161 (25 bp)
CTGTAGGCTTTTCCAGCAGGTGTTA
LOC_Os04g52900
Os.5631.1.S1_s_at--840--2231Chr04:31284096..31284120 (25 bp)
AAATTGTCACCAGCACATTGGCGTG
LOC_Os04g52900
Os.5631.1.S1_s_at--517--3851Chr04:31284047..31284071 (25 bp)
CTGACTCCCTCCCTAAAGGTGAATA
LOC_Os04g52900
Os.5631.1.S1_s_at--504--231Chr04:31283982..31284006 (25 bp)
ATATTCTTGTTGTACTGCCGTCCTC
LOC_Os04g52900
Os.5631.1.S1_s_at--439--3211Chr04:31283958..31283982 (25 bp)
CAAGGACATCGTCTGTTGTGCAAAA
LOC_Os04g52900
Target Sequence 
ATCACTCTACAGAATGTCCTCGAAGGGAAGCACAACACCGAAATTGANGATACACTCGCTCAGTATGAGGTTCCATCTGA
TAGGTGGTGGTCATCGCTATACAAAGTCATGGAAGGACTTGCCATGATGAGCCGATTGGGTCGCAACCGTCTACAGCAAC
CAAGTTATAATTTTGAAAACAACAGTTCTATTGACTGGGACCAAATGTAGATGTGCAAGCATGACTGATCCCTGAAGCCC
NNNNNNNNNNNNNNNNNNNAGCTGTAGGCTTTTCCAGCAGGTGTTAATTCCTGGAGACATGTAAATTGTCACCAGCACAT
TGGCGTGCATGTCGTAAGTAGATTTACNGTCCTGACTCCCTCCCTAAAGGTGAATAACAGGGGAGTTTTTCTGTTCTTTT
TTGCAACAGCATGACCATATTCTTGTTGTACTGCCGTCCTCAAGGACATCGTCTGTTGTGCAAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.5631.1.S1_s_at     

Putative homologies in rice

Putative homologies in arabidopsis