Browse Element(s) Details


OsAffx.14454.1.S1_at

Description tigr:9632.m05577
TID=OsAffx.14454.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os04g5717011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os04g57140Os.14699.1.S1_at8/114+33821058..33830470kinesin-like calmodulin binding protein, putative, expressed
LOC_Os04g57150Os.27939.1.A1_at11/114+33835254..33839085Tafazzin, putative, expressed
LOC_Os04g57160NANA4+33840976..33843492oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57170OsAffx.14454.1.S1_at11/114+33845694..33846643hypothetical protein
LOC_Os04g57180Os.49944.1.S1_at10/114+33848590..33851736oxidoreductase, 2OG-Fe oxygenase family protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_s_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190Os.24656.1.S1_at11/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57190OsAffx.14455.1.S1_at9/114+33854103..33858227Ubiquitin carboxyl-terminal hydrolase, family 1 protein, expressed
LOC_Os04g57200Os.7115.1.S1_a_at11/114+33861558..33862845heavy metal-associated domain containing protein, expressed
LOC_Os04g57210Os.9650.1.A1_at11/114+33864372..33868483Actin family protein, expressed
LOC_Os04g57220Os.22723.1.S1_a_at11/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed
LOC_Os04g57220Os.22723.3.S1_x_at5/114+33868683..33871611Ubiquitin-conjugating enzyme E2-17 kDa, putative, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14454.1.S1_at--721--10631Chr04:33846566..33846590 (25 bp)
TTCGAGCTGCTGGTGCGGCTTCGTT
LOC_Os04g57170
OsAffx.14454.1.S1_at--763--10411Chr04:33846469..33846493 (25 bp)
TTATATGCCCCGGTGTCGCACAGTG
LOC_Os04g57170
OsAffx.14454.1.S1_at--281--7751Chr04:33846458..33846482 (25 bp)
GGTGTCGCACAGTGCTACGCTGCTG
LOC_Os04g57170
OsAffx.14454.1.S1_at--986--9091Chr04:33846435..33846459 (25 bp)
TGCCGAACCGGTCAGACTCACAAGG
LOC_Os04g57170
OsAffx.14454.1.S1_at--937--4111Chr04:33846362..33846386 (25 bp)
CGAATGGGACGTGCGGCGCCAAAAA
LOC_Os04g57170
OsAffx.14454.1.S1_at--262--4151Chr04:33846320..33846344 (25 bp)
CGCGGGTGGTATACGTGTTGCCTCC
LOC_Os04g57170
OsAffx.14454.1.S1_at--1124--4151Chr04:33846289..33846313 (25 bp)
CGCCGCGTGACGTTGCTGAGACAGC
LOC_Os04g57170
OsAffx.14454.1.S1_at--470--1411Chr04:33846271..33846295 (25 bp)
AGACAGCGGGATATTTTGGTCGCCC
LOC_Os04g57170
OsAffx.14454.1.S1_at--768--10531Chr04:33846256..33846280 (25 bp)
TTGGTCGCCCGGGTCCTGATTGACC
LOC_Os04g57170
OsAffx.14454.1.S1_at--849--2331Chr04:33846197..33846221 (25 bp)
AAAGATGGATGCGTCGCACCCGTCG
LOC_Os04g57170
OsAffx.14454.1.S1_at--790--7691Chr04:33846169..33846193 (25 bp)
GGGTCAGGTTCTGCTCCTCTGCAAC
LOC_Os04g57170
Target Sequence 
TTCGAGCTGCTGGTGCGGCTTCGTTTTCTCTCGTCTCCTCTCCAATCCTGGCGCTCCTCCGGAGCTGGAAAGGGCAGCTC
CACCTCCACGCCCTCTTTTATATGCCCCGGTGTCGCACAGTGCTACGCTGCTGCCGAACCGGTCAGACTCACAAGGGCGG
AGGCTGAGGCAGGGCAGGGCCCCCGTAATCCGGGAGACGGGGGGCGAATGGGACGTGCGGCGCCAAAAAGACGCGAGCAC
AGGTCGCGCGGGTGGTATACGTGTTGCCTCCCCCGCGCGCCGCGTGACGTTGCTGAGACAGCGGGATATTTTGGTCGCCC
GGGTCCTGATTGACCGAGCGGCGAGGCGTGGCTACTTGAAGGAGACGGGAAAGATGGATGCGTCGCACCCGTCGCGGGGG
TCAGGTTCTGCTCCTCTGCAAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14454.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis