Browse Element(s) Details


OsAffx.14504.1.S1_at

Description tigr:9633.m00166
TID=OsAffx.14504.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0247010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g02440NANA5+809476..809823hypothetical protein
LOC_Os05g02450Os.54606.1.S1_at11/115+813789..816137expressed protein
LOC_Os05g02450Os.56980.1.S1_at11/115+813789..816137expressed protein
LOC_Os05g02460OsAffx.26694.1.S1_at11/115+819840..820509hypothetical protein
LOC_Os05g02470OsAffx.14504.1.S1_at10/115+823531..825261hypothetical protein
LOC_Os05g02480Os.6237.1.S1_at11/115+827192..828400expressed protein
LOC_Os05g02490Os.7790.1.S1_at11/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02490OsAffx.21596.1.S1_at1/115+829801..836087Adenosine 3'-phospho 5'-phosphosulfate transporter 1, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_x_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500OsAffx.14505.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02500Os.16976.1.S1_at11/115+836423..840267MAP kinase phosphatase, putative, expressed
LOC_Os05g02510Os.9285.1.S1_s_at10/115+843032..848821Glycosyl hydrolase family 20, catalytic domain containing protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14504.1.S1_at--505--2772Chr05:823940..823963 (24 bp)
AAGACCATTGATTTTTATATGGATC
LOC_Os05g02470
OsAffx.14504.1.S1_at--507--10191NONE
TATATGGATCTGATGCACCGCACGA
NONE
OsAffx.14504.1.S1_at--893--8851Chr05:824957..824981 (25 bp)
TGATGCACCGCACGAATCCGCCGGT
LOC_Os05g02470
OsAffx.14504.1.S1_at--36--5251Chr05:824970..824994 (25 bp)
GAATCCGCCGGTGGAATCCGACCTG
LOC_Os05g02470
OsAffx.14504.1.S1_at--522--8511Chr05:824981..825005 (25 bp)
TGGAATCCGACCTGTCGCGGGTGAT
LOC_Os05g02470
OsAffx.14504.1.S1_at--276--1771Chr05:824990..825014 (25 bp)
ACCTGTCGCGGGTGATCCGGTACGT
LOC_Os05g02470
OsAffx.14504.1.S1_at--737--8851Chr05:825002..825026 (25 bp)
TGATCCGGTACGTCCGAGCCGACAA
LOC_Os05g02470
OsAffx.14504.1.S1_at--1072--4091Chr05:825086..825110 (25 bp)
CGCACCTGCGGCTGACGATGGCCGA
LOC_Os05g02470
OsAffx.14504.1.S1_at--814--871Chr05:825103..825127 (25 bp)
ATGGCCGAGCGCTTGGGCCAGAACT
LOC_Os05g02470
OsAffx.14504.1.S1_at--859--1651Chr05:825110..825134 (25 bp)
AGCGCTTGGGCCAGAACTGCGACGC
LOC_Os05g02470
OsAffx.14504.1.S1_at--56--4411Chr05:825119..825143 (25 bp)
GCCAGAACTGCGACGCCGGCCAGAT
LOC_Os05g02470
Target Sequence 
AAGACCATTGATTTTTATATGGATCTGATGCACCGCACGAATCCGCCGGTGGAATCCGACCTGTCGCGGGTGATCCGGTA
CGTCCGAGCCGACAACGCCGGGAGGTACGGCGAGCAGGAGTGGGCGCCGGTGAGGGTGAACACCAACAACCTGACGCACC
TGCGGCTGACGATGGCCGAGCGCTTGGGCCAGAACTGCGACGCCGGCCAGAT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14504.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis