Browse Element(s) Details


OsAffx.14569.1.S1_at

Description tigr:9633.m00542
TID=OsAffx.14569.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Leucine Rich Repeat, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g0624011/11Leucine Rich Repeat family protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g06230OsAffx.4262.1.S1_at11/115+3131123..3134084hypothetical protein
LOC_Os05g06230Os.37711.1.S1_at1/115+3131123..3134084hypothetical protein
LOC_Os05g06240OsAffx.14569.1.S1_at11/115+3134563..3136250Leucine Rich Repeat family protein
LOC_Os05g06250OsAffx.26756.1.S1_at10/115+3156894..3158960hypothetical protein
LOC_Os05g06260Os.16079.1.S1_at9/115+3159599..3166113Gamma-tubulin complex component 4 homolog, putative, expressed

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Gene Ontology Classification
GO idTypeName
GO:0000074biological_processregulation of progression through cell cycle
GO:0006468biological_processprotein amino acid phosphorylation
GO:0007165biological_processsignal transduction
GO:0007169biological_processtransmembrane receptor protein tyrosine kinase signaling pathway
GO:0005576cellular_componentextracellular region
GO:0016020cellular_componentmembrane
GO:0004672molecular_functionprotein kinase activity
GO:0004674molecular_functionprotein serine/threonine kinase activity
GO:0004675molecular_functiontransmembrane receptor protein serine/threonine kinase activity
GO:0005515molecular_functionprotein binding
GO:0005524molecular_functionATP binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14569.1.S1_at--750--5131Chr05:3135174..3135198 (25 bp)
GCAACCTTTCGATGTTAGCTGCCAT
LOC_Os05g06240
OsAffx.14569.1.S1_at--145--9411Chr05:3135108..3135132 (25 bp)
TCGGCCCTAACCTTATGGAGATATC
LOC_Os05g06240
OsAffx.14569.1.S1_at--61--351Chr05:3135077..3135101 (25 bp)
ATACAACCGTTTCATGTCCATCTCA
LOC_Os05g06240
OsAffx.14569.1.S1_at--682--5571Chr05:3134988..3135012 (25 bp)
GAAATCGTGTTCAGTTTGTCGGCCG
LOC_Os05g06240
OsAffx.14569.1.S1_at--374--3191Chr05:3134942..3134966 (25 bp)
CAATCCCCGAGTTCGTGGGTGATCA
LOC_Os05g06240
OsAffx.14569.1.S1_at--976--1151Chr05:3134880..3134904 (25 bp)
AGTCTATTTGGCCATATCCCTACGT
LOC_Os05g06240
OsAffx.14569.1.S1_at--333--10511Chr05:3134848..3134872 (25 bp)
TTCAACTCGTATTCGTTCGGTCCAA
LOC_Os05g06240
OsAffx.14569.1.S1_at--160--4871Chr05:3134806..3134830 (25 bp)
GCTAGATAAGCTGTCTGGCCCAATT
LOC_Os05g06240
OsAffx.14569.1.S1_at--1078--7431Chr05:3134757..3134781 (25 bp)
GTGTACCTAGACCTTCATGGCAATC
LOC_Os05g06240
OsAffx.14569.1.S1_at--645--7991Chr05:3134653..3134677 (25 bp)
GGATGTTCCACAATCACTCATGCAG
LOC_Os05g06240
OsAffx.14569.1.S1_at--525--351Chr05:3134597..3134621 (25 bp)
ATAACTCGCTATGTGGACAACTGCC
LOC_Os05g06240
Target Sequence 
GCAACCTTTCGATGTTAGCTGCCATCTACCTCAACAACAACAGTCTGTCTGGCGACGTCCCTCCACTCGGCCCTAACCTT
ATGGAGATATCGTTGTCATACAACCGTTTCATGTCCATCTCACCGGAGTTCTTCAAAGATATGGAAATCGTGTTCAGTTT
GTCGGCCGTCAATGCAAATATCATTGGCCCAATCCCCGAGTTCGTGGGTGATCACTTCAAGTATCTCGGAACACTGAAGC
TACAAGGAAATAGTCTATTTGGCCATATCCCTACGTCATTCGCTTCAACTCGTATTCGTTCGGTCCAACTACAGGATCAA
AGAGGGCTAGATAAGCTGTCTGGCCCAATTTTTATGTTAAATGCCACCAACATTGTGTACCTAGACCTTCATGGCAATCA
ATTTACCGGGCCAATCCCGAACCTGGCAAGTAACATCGAGATGGAATATATTGATCTTAGCAAGAATGCCCTGACTGGGG
ATGTTCCACAATCACTCATGCAGCTGCACCACCTGCGGGTGTTAAATCTATCAGATAACTCGCTATGTGGACAACTGCC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14569.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis