Browse Element(s) Details


OsAffx.14622.1.S1_at

Description tigr:9633.m00926
TID=OsAffx.14622.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hAT family dimerisation domain, putative
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1064011/11hAT family dimerisation domain containing protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g10600NANA5+5756046..5756468hypothetical protein
LOC_Os05g10610NANA5+5759560..5761776retrotransposon protein, putative, unclassified
LOC_Os05g10620Os.39872.1.A1_s_at11/115+5763454..5768869no apical meristem, putative, expressed
LOC_Os05g10630Os.25488.1.S1_at11/115+5771164..5776610O-sialoglycoprotein endopeptidase, putative, expressed
LOC_Os05g10640OsAffx.14622.1.S1_at11/115+5777695..5780025hAT family dimerisation domain containing protein
LOC_Os05g10650Os.9848.1.S1_at11/115+5792576..5794816Phosphofructokinase family protein, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14622.1.S1_at--357--7591Chr05:5779447..5779471 (25 bp)
GGGCTAGTTGTTACTTGTCATCAGC
LOC_Os05g10640
OsAffx.14622.1.S1_at--1039--3591Chr05:5779491..5779515 (25 bp)
CATTGCTTTGATTGACTTGGTAACT
LOC_Os05g10640
OsAffx.14622.1.S1_at--1104--6271Chr05:5779562..5779586 (25 bp)
GATGTTTTGCTTGCTTTGATCCAGA
LOC_Os05g10640
OsAffx.14622.1.S1_at--616--5711Chr05:5779588..5779612 (25 bp)
GACTCTTTCTCCCAATTTGATGTGG
LOC_Os05g10640
OsAffx.14622.1.S1_at--426--791Chr05:5779607..5779631 (25 bp)
ATGTGGACATGCTTCTCAGTCTTGC
LOC_Os05g10640
OsAffx.14622.1.S1_at--958--1151Chr05:5779624..5779648 (25 bp)
AGTCTTGCTGATATTTACTCTGCTG
LOC_Os05g10640
OsAffx.14622.1.S1_at--310--9911Chr05:5779639..5779663 (25 bp)
TACTCTGCTGATTTCTCAATGACTG
LOC_Os05g10640
OsAffx.14622.1.S1_at--1042--9911Chr05:5779716..5779740 (25 bp)
TACTGCTGATTTTTCAAGCTGCAAT
LOC_Os05g10640
OsAffx.14622.1.S1_at--108--2551Chr05:5779749..5779773 (25 bp)
AACTCTGGCCCTGAAGATGGTCCAA
LOC_Os05g10640
OsAffx.14622.1.S1_at--363--651Chr05:5779780..5779804 (25 bp)
ATGCATGTAGCATTCCCACTGGTTT
LOC_Os05g10640
OsAffx.14622.1.S1_at--897--9291Chr05:5779793..5779817 (25 bp)
TCCCACTGGTTTATCGACTCATTGA
LOC_Os05g10640
Target Sequence 
GGGCTAGTTGTTACTTGTCATCAGCAGTATTACGTTGAGACTTTCATTGCTTTGATTGACTTGGTAACTTCTGATATGAA
CAATAGGTTCAGTAAGACTTTTATGGATCTATTGAGATGTTTTGCTTGCTTTGATCCAGATGACTCTTTCTCCCAATTTG
ATGTGGACATGCTTCTCAGTCTTGCTGATATTTACTCTGCTGATTTCTCAATGACTGATCGTGAAATTCTCAGAGAACAA
CTTCACATGTTCATTATCCATGTCAGAAATACTGCTGATTTTTCAAGCTGCAATGATCTTGCAACTCTGGCCCTGAAGAT
GGTCCAAACTGAAATGCATGTAGCATTCCCACTGGTTTATCGACTCATTGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14622.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis