Browse Element(s) Details


OsAffx.14631.1.S1_at

Description tigr:9633.m00976
TID=OsAffx.14631.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Cytochrome P450
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1113010/11Cytochrome P450 90D2, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g11110NANA5+6220328..6224644retrotransposon protein, putative, Ty1-copia subclass
LOC_Os05g11120NANA5+6236551..6237132PRA1 family protein, expressed
LOC_Os05g11130OsAffx.14631.1.S1_at10/115+6247218..6252091Cytochrome P450 90D2, putative, expressed
LOC_Os05g11140Os.6310.1.S1_at11/115+6252623..6261853protein kinase family protein, putative, expressed
LOC_Os05g11150OsAffx.14632.1.S1_at11/115+6264236..6264772hypothetical protein
LOC_Os05g11160Os.56929.1.S1_at11/115+6271519..6272790expressed protein

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Gene Ontology Classification
GO idTypeName
GO:0009826biological_processunidimensional cell growth
GO:0009965biological_processleaf morphogenesis
GO:0016132biological_processbrassinosteroid biosynthesis
GO:0042814biological_processmonopolar cell growth
GO:0008395molecular_functionsteroid hydroxylase activity
GO:0010012molecular_functionsteroid 22-alpha hydroxylase activity
GO:0019825molecular_functionoxygen binding
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14631.1.S1_at--436--1331Chr05:6249055..6249079 (25 bp)
AGAGGACTCCGTGCCAGTGCTCATC
LOC_Os05g11130
OsAffx.14631.1.S1_at--396--1131Chr05:6249070..6249094 (25 bp)
AGTGCTCATCACACTTGCCATCAAG
LOC_Os05g11130
OsAffx.14631.1.S1_at--820--9151Chr05:6249107..6249131 (25 bp)
TGCCCATTGGCTTTGCAGCAACTAG
LOC_Os05g11130
OsAffx.14631.1.S1_at--246--1391Chr05:6250439..6250463 (25 bp)
AGAAATCAGACGTGGGCGAAACCCT
LOC_Os05g11130
OsAffx.14631.1.S1_at--1052--5531Chr05:6250456..6250480 (25 bp)
GAAACCCTAGAGTGGACAGACTACA
LOC_Os05g11130
OsAffx.14631.1.S1_at--1100--751Chr05:6250480..6250504 (25 bp)
ATGTCACTGACGTTCACGCAGCATG
LOC_Os05g11130
OsAffx.14631.1.S1_at--803--8651Chr05:6251029..6251052 (24 bp)
TGTAATCACGGAGACCCTACGGATA
LOC_Os05g11130
OsAffx.14631.1.S1_at--922--8611Chr05:6251137..6251161 (25 bp)
TGGTGTGTCCTCGTTTACTTCCGTT
LOC_Os05g11130
OsAffx.14631.1.S1_at--86--4311Chr05:6251195..6251219 (25 bp)
CCTATGCCTTCAACCCATGGAGATG
LOC_Os05g11130
OsAffx.14631.1.S1_at--25--4111Chr05:6251243..6251267 (25 bp)
CGACTGCCAACAGTGGTAGCGGCTT
LOC_Os05g11130
OsAffx.14631.1.S1_at--855--7091NONE
GTCACTAATTTCACGTGGGTGGCAC
NONE
Target Sequence 
AGAGGACTCCGTGCCAGTGCTCATCACACTTGCCATCAAGTACCTCAGCGAATGCCCATTGGCTTTGCAGCAACTAGAGG
AGGAGAACATGGAGCTGAAGAGGCAGAAATCAGACGTGGGCGAAACCCTAGAGTGGACAGACTACATGTCACTGACGTTC
ACGCAGCATGTAATCACGGAGACCCTACGGATAGGCAACATCATCAGCGGGATAATGAGGAAGGCAGTAAGGGATGTGGA
GGTGAAGGGGCAGGGTGACGTGGTGATCCCCAAGGGGTGGTGTGTCCTCGTTTACTTCCGTTCTGTCCACCTAGACGCCA
ACATCTACGACGACCCCTATGCCTTCAACCCATGGAGATGGAAAGAGAGGGACATGGCGGCCGCGACTGCCAACAGTGGT
AGCGGCTTCACTCCCTTTGGGGGCGGGCAAAGGCTATGCCCGGGGCTAGACTTGGCCAGGCTCCAGACCTCCATCTTTCT
CCACCACCTCGTCACTAATTTCACGTGGGTGGCAC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14631.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis