Browse Element(s) Details


OsAffx.14706.1.S1_at

Description tigr:9633.m01355
TID=OsAffx.14706.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1535011/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15280OsAffx.20877.1.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280Os.48015.1.A1_x_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15280OsAffx.10665.2.S1_at1/115+8644822..8647071retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15290NANA5+8649347..8651906retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15300Os.55077.1.S1_at11/115+8655868..8658571expressed protein
LOC_Os05g15310OsAffx.26905.1.S1_at11/115+8658997..8659323hypothetical protein
LOC_Os05g15320NANA5+8659936..8663086transposon protein, putative, CACTA, En/Spm sub-class
LOC_Os05g15330OsAffx.26906.1.S1_at10/115+8663358..8664316hypothetical protein
LOC_Os05g15340NANA5+8666397..8667505retrotransposon protein, putative, Ty3-gypsy subclass, expressed
LOC_Os05g15350OsAffx.14706.1.S1_at11/115+8668015..8669655hypothetical protein
LOC_Os05g15350OsAffx.14659.1.S1_at2/115+8668015..8669655hypothetical protein
LOC_Os05g15360Os.27007.1.A1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.20186.1.S1_at11/115+8671073..8675764expressed protein
LOC_Os05g15360Os.49286.1.S1_x_at10/115+8671073..8675764expressed protein
LOC_Os05g15360Os.24955.1.A1_x_at1/115+8671073..8675764expressed protein
LOC_Os05g15370Os.27007.1.A1_at3/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.49286.1.S1_x_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.9815.1.S1_at2/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15370Os.24955.1.A1_x_at1/115+8676822..8683310ribosomal protein L13 containing protein, expressed
LOC_Os05g15380OsAffx.31445.1.S1_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15380OsAffx.31445.1.S1_x_at11/115+8684556..8685685lipase class 3 family protein, putative
LOC_Os05g15390OsAffx.26907.1.S1_at11/115+8686719..8687499hypothetical protein
LOC_Os05g15400NANA5+8689001..8692779hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14706.1.S1_at--114--7771Chr05:8669365..8669389 (25 bp)
GGTGAACTCACTATTTACTCATCTT
LOC_Os05g15350
OsAffx.14706.1.S1_at--358--2291Chr05:8669307..8669331 (25 bp)
AAATGCTTTATCCTTGTATTGCTAA
LOC_Os05g15350
OsAffx.14706.1.S1_at--775--4931Chr05:8669128..8669152 (25 bp)
GCTTGTGCGACCTAGCCAATCAAGT
LOC_Os05g15350
OsAffx.14706.1.S1_at--1136--7211Chr05:8668503..8668527 (25 bp)
GTCGCATTCAACCTTGGCAGGTATC
LOC_Os05g15350
OsAffx.14706.1.S1_at--782--7851Chr05:8668484..8668508 (25 bp)
GGTATCAAGCAGTTATTCCGGAAGT
LOC_Os05g15350
OsAffx.14706.1.S1_at--422--2871Chr05:8668463..8668487 (25 bp)
AAGTGGTCGCAAGCTAGTTATTCCG
LOC_Os05g15350
OsAffx.14706.1.S1_at--421--3071Chr05:8668230..8668404 (25 bp)
AATCTTGGCAGCTTGTTATCCTCTT
LOC_Os05g15350
OsAffx.14706.1.S1_at--211--571Chr05:8668213..8668237 (25 bp)
ATCCTCTTGAGTACGGTTTGCGCTG
LOC_Os05g15350
OsAffx.14706.1.S1_at--1060--9151Chr05:8668195..8668219 (25 bp)
TGCGCTGGTGCTCTTTTGCTTCAAA
LOC_Os05g15350
OsAffx.14706.1.S1_at--783--10252Chr09:5952356..5952380 (25 bp)
TTTGCTTCAAACCTACTGCCGTGAA
NONE
OsAffx.14706.1.S1_at--243--1371Chr05:8668046..8668137 (25 bp)
AGAGCTTCGTTGACACATCCAGAAA
LOC_Os05g15350
Target Sequence 
GGTGAACTCACTATTTACTCATCTTAACCCAAATTTTAGTGAGAATTTTATACTACCTAAATGCTTTATCCTTGTATTGC
TAAGGTTTACACCTGAGGATATCATCACTACGTCAAGAAGGATGAGTTACGTTGAGGACGACAAGGGTTATGCCGAGGAG
GAATCAACCCATGCCCAACCAGCAGCTGTCTATGCTAACAAGAAGATGGTTTACGTTGTAAAGACTCAACTTCCAAGGCT
TGTGCGACCTAGCCAATCAAGTCGGAGTACAGGAGGCCTCGGATCGTTCTCACCCTCACCACTTGGTCGCATTCAACCTT
GGCAGGTATCAAGCAGTTATTCCGGAAGTGGTCGCAAGCTAGTTATTCCGGAAGTGGTCGCATCCAACCTTGGCTGGTAT
AAAGCTAGTTATTCCGGAAGTGGTATCCAATCTTGGCAGCTTGTTATCCTCTTGAGTACGGTTTGCGCTGGTGCTCTTTT
GCTTCAAACCTACTGCCGTGAAGATTGGGCCACCCCTCGCGAGTATGTTCGCATCATATGGTATCAGAGCTTCGTTGACA
CATCCAGAAA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14706.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis