Browse Element(s) Details


OsAffx.1471.1.S1_x_at

Description gb:NM_186558.1
DB_XREF= gi:34900201
GEN=OJ1080_F08.19
TID=OsAffx.1471.1
CNT=2
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) hypothetical protein~predicted by GeneMark.hmm etc. (OJ1080_F08.19), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os07g407101/11circadian clock coupling factor, putative, expressed
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os07g40670Os.29856.2.S1_x_at1/117+24371576..24372343hypothetical protein
LOC_Os07g40680NANA7+24375158..24376371retrotransposon protein, putative, unclassified
LOC_Os07g40690Os.46924.1.S1_at11/117+24382713..24384966NAD dependent epimerase/dehydratase family protein, expressed
LOC_Os07g40700Os.35300.1.S1_at10/117+24387459..24391897tRNA/rRNA methyltransferase, putative, expressed
LOC_Os07g40710Os.14803.1.S1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.5588.1.A1_at11/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_x_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40710OsAffx.1471.1.S1_at1/117+24394455..24399093circadian clock coupling factor, putative, expressed
LOC_Os07g40730Os.50618.1.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.3.S1_at11/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_x_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40730Os.50618.2.S1_at10/117+24401672..24414935Helicase conserved C-terminal domain containing protein, expressed
LOC_Os07g40740Os.53364.1.S1_at11/117+24415688..24417746Heparanase-like protein 1 precursor, putative, expressed
LOC_Os07g40750Os.53545.1.S1_at11/117+24418192..24420620pentatricopeptide, putative, expressed
LOC_Os07g40760OsAffx.32289.1.S1_at1/117+24421050..24426782transposon protein, putative, Mutator sub-class

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.1471.1.S1_x_at--503--10871Chr07:6477735..6477759 (25 bp)
TTGGCATCGCCTTCCAGCCATGGCG
NONE
OsAffx.1471.1.S1_x_at--71--3831Chr07:6477698..6477722 (25 bp)
CTGCGAGAGCTTCGTCTACACATGG
NONE
OsAffx.1471.1.S1_x_at--1015--9391Chr07:6477687..6477711 (25 bp)
TCGTCTACACATGGCCGTTCGAGCT
NONE
OsAffx.1471.1.S1_x_at--1150--9852Chr07:24397492..24397516 (25 bp)
TACACATGGCCGTTCGAGCTCTCCT
LOC_Os07g40710
OsAffx.1471.1.S1_x_at--477--4071Chr07:6477600..6477624 (25 bp)
CGAGGTCGTGCACCTGCATCGTCGA
NONE
OsAffx.1471.1.S1_x_at--968--7451Chr07:6477395..6477539 (25 bp)
GTGTCGCCATGGGAAGGAACTCTCG
NONE
OsAffx.1471.1.S1_x_at--1154--791NONE
ATGGGAAGGAACTCTCGTCACCGTC
NONE
OsAffx.1471.1.S1_x_at--267--8191Chr07:6477384..6477408 (25 bp)
GGAAGGAACTCTCGTCACCGTCGTC
NONE
OsAffx.1471.1.S1_x_at--171--7211Chr07:6477353..6477377 (25 bp)
GTCGTCTCCGGCGAATTCGAAGGTG
NONE
OsAffx.1471.1.S1_x_at--998--4551Chr07:6477343..6477367 (25 bp)
GCGAATTCGAAGGTGGCTTACGGCC
NONE
OsAffx.1471.1.S1_x_at--813--9351Chr07:6477337..6477361 (25 bp)
TCGAAGGTGGCTTACGGCCAGCGTT
NONE
Target Sequence 
TTGGCATCGCCTTCCAGCCATGGCGGCTGCTCAGCTCCTGCGAGAGCTTCGTCTACACATGGCCGTTCGAGCTCTCCTCC
GCCGCCCGTGGCCGCTGCGCTCCCCGGCGACCTACAACTCCGACGACCGCGAGGGCGAGGTCGTGCACCTGCATCGTCGA
GGACGGCGGCGGCGGCAGCTCCCGAGACCGAGCTCGCCCGGCGCATCGTCGAGCACGGCGGTGTCGCCATGGGAAGGAAC
TCTCGTCACCGTCGTCATCGTCGTCGTCTCCGGCGAATTCGAAGGTGGCTTACGGCCAGCGTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.1471.1.S1_x_at     

Putative homologies in rice

Putative homologies in arabidopsis