Browse Element(s) Details


OsAffx.14717.1.S1_at

Description tigr:9633.m01423
TID=OsAffx.14717.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1600010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15960NANA5+8990846..8993761retrotransposon protein, putative, unclassified
LOC_Os05g15970NANA5+8994091..9000171retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15980OsAffx.21897.5.S1_x_at4/115+9002625..9005548retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g15990NANA5+9005866..9011976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16000OsAffx.14717.1.S1_at10/115+9014838..9016985hypothetical protein
LOC_Os05g16010NANA5+9020747..9022660retrotransposon protein, putative, LINE subclass
LOC_Os05g16020OsAffx.4352.1.S1_at11/115+9031665..9032540Zinc knuckle family protein
LOC_Os05g16030OsAffx.4353.1.S1_at11/115+9033211..9033690hypothetical protein
LOC_Os05g16040OsAffx.14718.1.S1_at10/115+9035283..9038032hypothetical protein
LOC_Os05g16050OsAffx.646.1.S1_at2/115+9040476..9040925expressed protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14717.1.S1_at--933--1131Chr05:9015852..9015876 (25 bp)
AGTGCCCAGCACAGATCTTGTACAA
LOC_Os05g16000
OsAffx.14717.1.S1_at--796--2211Chr05:9015831..9015855 (25 bp)
ACAAGAGCAGGCTATGCACCGGCGT
LOC_Os05g16000
OsAffx.14717.1.S1_at--546--10131Chr05:9015819..9015843 (25 bp)
TATGCACCGGCGTCTGGGAATCAGC
LOC_Os05g16000
OsAffx.14717.1.S1_at--420--991Chr05:9015763..9015787 (25 bp)
AGGAGGATCCTTTCGTGGTCAGCTC
LOC_Os05g16000
OsAffx.14717.1.S1_at--932--8931Chr05:9015624..9015648 (25 bp)
TGACCCACTGAACGCAAGCGTCATG
LOC_Os05g16000
OsAffx.14717.1.S1_at--478--4651Chr05:9015607..9015631 (25 bp)
GCGTCATGTATCTGATCGTTGGCAA
LOC_Os05g16000
OsAffx.14717.1.S1_at--128--2391Chr05:9015523..9015547 (25 bp)
AAACTGAAGGCCCTCCATATGCTAT
LOC_Os05g16000
OsAffx.14717.1.S1_at--1147--251Chr05:9015507..9015531 (25 bp)
ATATGCTATCACCTCTGTCCTTAAA
LOC_Os05g16000
OsAffx.14717.1.S1_at--306--9111NONE
TGCTGCAGGAACTTTTTCACGCGAC
NONE
OsAffx.14717.1.S1_at--914--10371Chr05:9014891..9014915 (25 bp)
TTTTCACGCGACAATGGTGACGCCA
LOC_Os05g16000
OsAffx.14717.1.S1_at--596--811Chr05:9014878..9014902 (25 bp)
ATGGTGACGCCAAAAGCAAGACTTT
LOC_Os05g16000
Target Sequence 
AGTGCCCAGCACAGATCTTGTACAAGAGCAGGCTATGCACCGGCGTCTGGGAATCAGCGAGGGGAGGCTGCGCTACGTCG
AGGTGTCCCAGGAGGATCCTTTCGTGGTCAGCTCATTTGCCCTTGACGACGACGGCAGCGGCTGGACGCTGGAGCACGAG
GTGGCGCTTGGTCGAATCTGCCAGGTGAAGGGAGGAGGCCCGAGGGACACCGCGCGGATTGCCGTCATTGACCCACTGAA
CGCAAGCGTCATGTATCTGATCGTTGGCAAACATGTTCTTGGTGTTGATATGGACATGGGGAAGGTGATGGGTTGTTCAC
TGGCAGATGAAACTGAAGGCCCTCCATATGCTATCACCTCTGTCCTTAAACCATGTGTGCTCCCACCATGGCTTTCATCA
AGCAAAATCCCTGCTGCAGGAACTTTTTCACGCGACAATGGTGACGCCAAAAGCAAGACTTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14717.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis