Browse Element(s) Details


OsAffx.14718.1.S1_at

Description tigr:9633.m01427
TID=OsAffx.14718.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1604010/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g15990NANA5+9005866..9011976retrotransposon protein, putative, Ty3-gypsy subclass
LOC_Os05g16000OsAffx.14717.1.S1_at10/115+9014838..9016985hypothetical protein
LOC_Os05g16010NANA5+9020747..9022660retrotransposon protein, putative, LINE subclass
LOC_Os05g16020OsAffx.4352.1.S1_at11/115+9031665..9032540Zinc knuckle family protein
LOC_Os05g16030OsAffx.4353.1.S1_at11/115+9033211..9033690hypothetical protein
LOC_Os05g16040OsAffx.14718.1.S1_at10/115+9035283..9038032hypothetical protein
LOC_Os05g16050OsAffx.646.1.S1_at2/115+9040476..9040925expressed protein
LOC_Os05g16060OsAffx.14719.1.S1_at11/115+9043030..9046088hypothetical protein
LOC_Os05g16070OsAffx.14719.1.S1_at1/115+9051033..9054539hypothetical protein
LOC_Os05g16080OsAffx.31811.2.S1_at11/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.2.S1_x_at11/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.11549.1.S1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.4.S1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080Os.31535.1.A1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.3.S1_x_at1/115+9061810..9064861Zinc knuckle family protein

Select all/Clear all

Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14718.1.S1_at--28--9211Chr05:9035320..9035344 (25 bp)
TGCCAGCTAGTAAGGCTGTAGCAAT
LOC_Os05g16040
OsAffx.14718.1.S1_at--66--3211Chr05:9035341..9035365 (25 bp)
CAATGTTAGCTCTCGTATGGATGGA
LOC_Os05g16040
OsAffx.14718.1.S1_at--772--8031Chr05:9035363..9035387 (25 bp)
GGAGTTCTCCGGCAACTCTACGCTA
LOC_Os05g16040
OsAffx.14718.1.S1_at--264--8031Chr05:9036440..9036464 (25 bp)
GGAGTCAAAACTCAAGACACCTATG
LOC_Os05g16040
OsAffx.14718.1.S1_at--1071--5631Chr05:9036455..9036479 (25 bp)
GACACCTATGCACTGTTGACTATGA
LOC_Os05g16040
OsAffx.14718.1.S1_at--158--3611Chr05:9036485..9036509 (25 bp)
CATTGTCGGAGTATACTTTACATCG
LOC_Os05g16040
OsAffx.14718.1.S1_at--12--3671Chr05:9036500..9036524 (25 bp)
CTTTACATCGAAACTCAACTATTGA
LOC_Os05g16040
OsAffx.14718.1.S1_at--307--9451Chr05:9036545..9036930 (25 bp)
TCGGACAGTCTGTATGTAGGGATTA
LOC_Os05g16040
OsAffx.14718.1.S1_at--886--9851NONE
TACAGGTTGTATTACGCCAACCCGC
NONE
OsAffx.14718.1.S1_at--555--3291Chr05:9037961..9037985 (25 bp)
CACATACTACCCTACAACATTGGTC
LOC_Os05g16040
OsAffx.14718.1.S1_at--901--2491Chr05:9037976..9038000 (25 bp)
AACATTGGTCATCGTCTCAACAAGG
LOC_Os05g16040
Target Sequence 
TGCCAGCTAGTAAGGCTGTAGCAATGTTAGCTCTCGTATGGATGGAGTTCTCCGGCAACTCTACGCTATGCAAGAAGAAG
ATAGGAGTCAAAACTCAAGACACCTATGCACTGTTGACTATGATAAATCATTGTCGGAGTATACTTTACATCGAAACTCA
ACTATTGAAATACGTTACCGAGAAAGAGTCGGACAGTCTGTATGTAGGGATTATACAGGTTGTATTACGCCAACCCGCCA
TGCTACAACACATACTACCCTACAACATTGGTCATCGTCTCAACAAGG

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14718.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis