Browse Element(s) Details


OsAffx.646.1.S1_at

Description gb:NM_193899.1
DB_XREF= gi:34914881
GEN=B1096D03.2
TID=OsAffx.646.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=Oryza sativa (japonica cultivar-group) B1096D03.2 (B1096D03.2), mRNA.
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g160502/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16000OsAffx.14717.1.S1_at10/115+9014838..9016985hypothetical protein
LOC_Os05g16010NANA5+9020747..9022660retrotransposon protein, putative, LINE subclass
LOC_Os05g16020OsAffx.4352.1.S1_at11/115+9031665..9032540Zinc knuckle family protein
LOC_Os05g16030OsAffx.4353.1.S1_at11/115+9033211..9033690hypothetical protein
LOC_Os05g16040OsAffx.14718.1.S1_at10/115+9035283..9038032hypothetical protein
LOC_Os05g16050OsAffx.646.1.S1_at2/115+9040476..9040925expressed protein
LOC_Os05g16060OsAffx.14719.1.S1_at11/115+9043030..9046088hypothetical protein
LOC_Os05g16070OsAffx.14719.1.S1_at1/115+9051033..9054539hypothetical protein
LOC_Os05g16080OsAffx.31811.2.S1_at11/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.2.S1_x_at11/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.11549.1.S1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.4.S1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080Os.31535.1.A1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.3.S1_x_at1/115+9061810..9064861Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.646.1.S1_at--145--1951NONE
ACGGCCTCGTCGCAGGGACATATAA
NONE
OsAffx.646.1.S1_at--998--2831Chr01:16131988..16132012 (25 bp)
AAGTCAGTGTAGATAGCAGTCGGAT
NONE
OsAffx.646.1.S1_at--523--7933Chr05:9040605..9040624 (20 bp)
GGATGAACGTGGCTTTGGCACCTCC
LOC_Os05g16050
OsAffx.646.1.S1_at--278--5095Chr11:11533983..11534107 (25 bp)
GCACCTCCTTCGGATGATGGATCTA
NONE
OsAffx.646.1.S1_at--449--271Chr01:16131753..16131934 (25 bp)
ATATGATAACGAGCCCACGAGCGAC
NONE
OsAffx.646.1.S1_at--160--5891Chr01:16131735..16131759 (25 bp)
GAGCGACGCTTCGATACACGGACGA
NONE
OsAffx.646.1.S1_at--277--1871Chr01:16131714..16131738 (25 bp)
ACGAGCGGCGACATAGATCTAGACA
NONE
OsAffx.646.1.S1_at--306--5252Chr08:12681174..12681196 (23 bp)
GAATCACGGACGGACGACATCGAAG
NONE
OsAffx.646.1.S1_at--1125--5871Chr01:16131655..16131679 (25 bp)
GAGCGGAGAGCATCACGGACGAACA
NONE
OsAffx.646.1.S1_at--1145--1351Chr01:16131608..16131632 (25 bp)
AGAGCACCACGGACGGATGACATCT
NONE
OsAffx.646.1.S1_at--769--671Chr01:16131592..16131616 (25 bp)
ATGACATCTCATCTTAGCATGACGA
NONE
Target Sequence 
ACGGCCTCGTCGCAGGGACATATAACAAAGATGTTGATGAAGAAGTCAGTGTAGATAGCAGTCGGATGAACGTGGCTTTG
GCACCTCCTTCGGATGATGGATCTACTATTGATCCGGTTGATATGATAACGAGCCCACGAGCGACGCTTCGATACACGGA
CGAGCGGCGACATAGATCTAGACAAAGAGGGAGAGAATCACGGACGGACGACATCGAAGAGCGGAGAGCATCACGGACGA
ACAACATCAATCTTGATTTAGAGGGAGAGCACCACGGACGGATGACATCTCATCTTAGCATGACGA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.646.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis