Browse Element(s) Details


OsAffx.14719.1.S1_at

Description tigr:9633.m01429
TID=OsAffx.14719.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1606011/11hypothetical protein
LOC_Os05g160701/11hypothetical protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16010NANA5+9020747..9022660retrotransposon protein, putative, LINE subclass
LOC_Os05g16020OsAffx.4352.1.S1_at11/115+9031665..9032540Zinc knuckle family protein
LOC_Os05g16030OsAffx.4353.1.S1_at11/115+9033211..9033690hypothetical protein
LOC_Os05g16040OsAffx.14718.1.S1_at10/115+9035283..9038032hypothetical protein
LOC_Os05g16050OsAffx.646.1.S1_at2/115+9040476..9040925expressed protein
LOC_Os05g16060OsAffx.14719.1.S1_at11/115+9043030..9046088hypothetical protein
LOC_Os05g16070OsAffx.14719.1.S1_at1/115+9051033..9054539hypothetical protein
LOC_Os05g16080OsAffx.31811.2.S1_at11/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.2.S1_x_at11/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.11549.1.S1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.4.S1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080Os.31535.1.A1_at1/115+9061810..9064861Zinc knuckle family protein
LOC_Os05g16080OsAffx.31811.3.S1_x_at1/115+9061810..9064861Zinc knuckle family protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14719.1.S1_at--651--72Chr05:9054348..9054372 (25 bp)
ATTGCGGCCATTGTCTTCTTCGTGG
LOC_Os05g16070
OsAffx.14719.1.S1_at--247--3011Chr05:9043725..9043746 (22 bp)
AATGACTGAGTTGATCGTTGAGCCA
LOC_Os05g16060
OsAffx.14719.1.S1_at--751--4031Chr05:9043710..9043734 (25 bp)
CGTTGAGCCAGAGAAGTTCACACCT
LOC_Os05g16060
OsAffx.14719.1.S1_at--42--5351Chr05:9043698..9043722 (25 bp)
GAAGTTCACACCTCAGAGCTGTTTA
LOC_Os05g16060
OsAffx.14719.1.S1_at--262--6411Chr05:9043402..9043655 (25 bp)
GATCTGATCAATTATTTCGACCCAA
LOC_Os05g16060
OsAffx.14719.1.S1_at--284--10292Chr04:29903142..29903537 (25 bp)
TTTCGACCCAAAATGCAATGACTCA
NONE
OsAffx.14719.1.S1_at--374--5191Chr05:9043374..9043398 (25 bp)
GCAATGACTCAAAATGGTTCCAGTA
LOC_Os05g16060
OsAffx.14719.1.S1_at--670--6691Chr05:9043361..9043382 (22 bp)
GTTCCAGTACTCTCAGAACCTGCTG
LOC_Os05g16060
OsAffx.14719.1.S1_at--1076--5431Chr05:9043129..9043367 (25 bp)
GAACCTGCTGATTAACTTCTCCAAG
LOC_Os05g16060
OsAffx.14719.1.S1_at--72--2531Chr05:9043116..9043140 (25 bp)
AACTTCTCCAAGGTTGCGCTTGATG
LOC_Os05g16060
OsAffx.14719.1.S1_at--149--2191Chr05:9043068..9043092 (25 bp)
ACAAAGTTTCAGAACCACTCCACCA
LOC_Os05g16060
Target Sequence 
ATTGCGGCCATTGTCTTCTTCGTGGCCGGCGATGGAGAACCAGTGGAGAAGAGCAGCGAGGATGCTCTCCCTCGGATGGA
TCGGCACTGGAATGACTGAGTTGATCGTTGAGCCAGAGAAGTTCACACCTCAGAGCTGTTTAAAGCTTCAGACGATTAAC
AAGGAGGAAAAACTCGCAAAACAAGATCTGATCAATTATTTCGACCCAAAATGCAATGACTCAAAATGGTTCCAGTACTC
TCAGAACCTGCTGATTAACTTCTCCAAGGTTGCGCTTGATGCCAAAATTGCAATAAAAGATATAACAAAGTTTCAGAACC
ACTCCACCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14719.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis