Browse Element(s) Details


OsAffx.14726.1.S1_at

Description tigr:9633.m01447
TID=OsAffx.14726.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1623011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16200OsAffx.4357.1.S1_at11/115+9130647..9134281NB-ARC domain containing protein
LOC_Os05g16210OsAffx.25135.2.S1_x_at11/115+9150447..9150986hypothetical protein
LOC_Os05g16210OsAffx.3516.1.S1_x_at2/115+9150447..9150986hypothetical protein
LOC_Os05g16220NANA5+9153029..9153328expressed protein
LOC_Os05g16230OsAffx.14726.1.S1_at11/115+9158480..9159589expressed protein
LOC_Os05g16240OsAffx.14727.1.S1_at11/115+9163257..9164510expressed protein
LOC_Os05g16250Os.54392.1.S1_at11/115+9167672..9171691expressed protein
LOC_Os05g16260OsAffx.14839.1.S1_at1/115+9182002..9185142hypothetical protein
LOC_Os05g16260Os.31845.1.S1_x_at1/115+9182002..9185142hypothetical protein

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14726.1.S1_at--107--2752Chr05:9159016..9159040 (25 bp)
AAGAAGACCATGTTCTGCCACCTCC
LOC_Os05g16230
OsAffx.14726.1.S1_at--501--1871Chr05:9158943..9158967 (25 bp)
ACGAGTACGCCGTCGCATCTCTCAG
LOC_Os05g16230
OsAffx.14726.1.S1_at--742--4911Chr05:9158886..9158910 (25 bp)
GCTTCGCGATGTGGCGGTTCCTGTC
LOC_Os05g16230
OsAffx.14726.1.S1_at--165--791Chr05:9158878..9158902 (25 bp)
ATGTGGCGGTTCCTGTCGCAAACAG
LOC_Os05g16230
OsAffx.14726.1.S1_at--494--7891Chr05:9158871..9158895 (25 bp)
GGTTCCTGTCGCAAACAGGCGAGTG
LOC_Os05g16230
OsAffx.14726.1.S1_at--1127--9331Chr05:9158811..9158835 (25 bp)
TCGCGCGGCAGCTGAACGTACACTC
LOC_Os05g16230
OsAffx.14726.1.S1_at--1134--8971Chr05:9158799..9158823 (25 bp)
TGAACGTACACTCGCACCACGAGGT
LOC_Os05g16230
OsAffx.14726.1.S1_at--708--1051Chr05:9158778..9158802 (25 bp)
AGGTGGTAGCCTTCGCCGGACGAAT
LOC_Os05g16230
OsAffx.14726.1.S1_at--74--3651Chr05:9158768..9158792 (25 bp)
CTTCGCCGGACGAATATGGTGGGTC
LOC_Os05g16230
OsAffx.14726.1.S1_at--456--4651Chr05:9158664..9158688 (25 bp)
GCGTGCTGCCAGAGCCAACCACGGG
LOC_Os05g16230
OsAffx.14726.1.S1_at--129--1231Chr05:9158634..9158658 (25 bp)
AGTTCATGGCGTCAGTGCTGGCTCA
LOC_Os05g16230
Target Sequence 
AAGAAGACCATGTTCTGCCACCTCCCGGGCCTCCTCACCCGGTCCGCGCAGGGGCACGGTCACGGGCCGCCCGACGAGTA
CGCCGTCGCATCTCTCAGCGAGGGGAACGGCCGCGACGGGAAGGATCGGGGCTTCGCGATGTGGCGGTTCCTGTCGCAAA
CAGGCGAGTGGGACAAGCTGGAGAGCTTGCCGTCGCCGCTCCCGCTCGCGCGGCAGCTGAACGTACACTCGCACCACGAG
GTGGTAGCCTTCGCCGGACGAATATGGTGGGTCGATCTGGGCTGGGGCGTGGTCTCCGCCGACCCGTTCAGCGACCGGCC
AGAGCTCCGCTTCATCGAGCTGCCGCGGAGCAGCGTGCTGCCAGAGCCAACCACGGGGGAGGAGTTCATGGCGTCAGTGC
TGGCTCA

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14726.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis