Browse Element(s) Details


OsAffx.14727.1.S1_at

Description tigr:9633.m01448
TID=OsAffx.14727.1
CNT=1
FEA=mRNA
TIER=ConsEnd
STK=0
NOTE=sequence(s) not in UniGene
DEF=hypothetical protein
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1624011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16210OsAffx.25135.2.S1_x_at11/115+9150447..9150986hypothetical protein
LOC_Os05g16210OsAffx.3516.1.S1_x_at2/115+9150447..9150986hypothetical protein
LOC_Os05g16220NANA5+9153029..9153328expressed protein
LOC_Os05g16230OsAffx.14726.1.S1_at11/115+9158480..9159589expressed protein
LOC_Os05g16240OsAffx.14727.1.S1_at11/115+9163257..9164510expressed protein
LOC_Os05g16250Os.54392.1.S1_at11/115+9167672..9171691expressed protein
LOC_Os05g16260OsAffx.14839.1.S1_at1/115+9182002..9185142hypothetical protein
LOC_Os05g16260Os.31845.1.S1_x_at1/115+9182002..9185142hypothetical protein
LOC_Os05g16270Os.45161.1.A1_x_at2/115+9186285..9192025retrotransposon protein, putative, unclassified
LOC_Os05g16270OsAffx.22699.1.S1_x_at1/115+9186285..9192025retrotransposon protein, putative, unclassified

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
OsAffx.14727.1.S1_at--161--931Chr05:9163829..9163853 (25 bp)
AGGCAGATGGACGTCTCCCACGAGG
LOC_Os05g16240
OsAffx.14727.1.S1_at--434--1651Chr05:9163736..9163760 (25 bp)
AGCGACCGACCGGAGCTGCAATTCG
LOC_Os05g16240
OsAffx.14727.1.S1_at--497--3851Chr05:9163721..9163745 (25 bp)
CTGCAATTCGTCCAGCTGCCGAGGG
LOC_Os05g16240
OsAffx.14727.1.S1_at--953--811Chr05:9163504..9163528 (25 bp)
ATGGATGCCACCCAGACCCGGAGGA
LOC_Os05g16240
OsAffx.14727.1.S1_at--2--10771Chr05:9163453..9163477 (25 bp)
TTGACCCACTCAATGCGAGCACAAT
LOC_Os05g16240
OsAffx.14727.1.S1_at--530--4611Chr05:9163439..9163463 (25 bp)
GCGAGCACAATGTACCTCACAATTG
LOC_Os05g16240
OsAffx.14727.1.S1_at--1120--6971Chr05:9163428..9163452 (25 bp)
GTACCTCACAATTGGTGACTCTTGT
LOC_Os05g16240
OsAffx.14727.1.S1_at--134--8951Chr05:9163413..9163437 (25 bp)
TGACTCTTGTGTTGCCGTGGACATG
LOC_Os05g16240
OsAffx.14727.1.S1_at--1136--8871Chr05:9163380..9163404 (25 bp)
TGAGGTGCTCGGACGTTCGCAGATA
LOC_Os05g16240
OsAffx.14727.1.S1_at--183--1271Chr05:9163360..9163384 (25 bp)
AGATAGGTTGCAGCACTGGCCCATT
LOC_Os05g16240
OsAffx.14727.1.S1_at--475--10731Chr05:9163288..9163312 (25 bp)
TTGAGGAATTCCAGATCCCTTCTGC
LOC_Os05g16240
Target Sequence 
AGGCAGATGGACGTCTCCCACGAGGTGGTGGCCTTCGCCGGCCGGCTGTGGTGGGTCGACGTGAGCTGGGGCGTCGTCTC
CGTCGACCCGTTCAGCGACCGACCGGAGCTGCAATTCGTCCAGCTGCCGAGGGGCAGTGTGACGGAGCCCGTGGAGGGGA
TACGGAAGCTAGGCAGGTTCCGCCTCGTCGGCGTCAGCGAGGGGAGGCTGCGCTACGCCGAGGTGTCCCAGAAGGAGCCA
TTCGTGCTCAGCTCCTTTGCCCTTGATGACAATGGCAGCAGCTGGACGCTGGAACACCGGGTAGCGCTCAGCCGGCTCGG
GGTGGATGGATGCCACCCAGACCCGGAGGAGGATGACACGCCACGGATTGGTGTCATTGACCCACTCAATGCGAGCACAA
TGTACCTCACAATTGGTGACTCTTGTGTTGCCGTGGACATGGAGCGGGGTGAGGTGCTCGGACGTTCGCAGATAGGTTGC
AGCACTGGCCCATTTTCGCCTTTCACCGGTTTCCTCACACCATGTATTCTCCCACCGTGGCTTGAGGAATTCCAGATCCC
TTCTGC

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around OsAffx.14727.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis