Browse Element(s) Details


Os.54392.1.S1_at

Description gb:AK103883.1
DB_XREF= gi:32989092
TID=Os.54392.1
CNT=1
FEA=FLmRNA
TIER=FL
STK=1
UG=Os.54392 (NCBI UniGene Cluster)
UG_TITLE=(japonica cultivar-group) cDNA clone:J033150A11, full insert sequence
DEF=Oryza sativa (japonica cultivar-group) cDNA clone:J033150A11, full insert sequence.
FL= gb:AK103883.1
REP_ORG=O. sativa
Associated TIGR Gene Locus
TIGR LocusMatching ProbesDescription
LOC_Os05g1625011/11expressed protein
Gene Context (flanking 25kb)
TIGR LocusMatching ProbesetMatching ProbesChrStrandCoordinatesDescription
LOC_Os05g16210OsAffx.25135.2.S1_x_at11/115+9150447..9150986hypothetical protein
LOC_Os05g16210OsAffx.3516.1.S1_x_at2/115+9150447..9150986hypothetical protein
LOC_Os05g16220NANA5+9153029..9153328expressed protein
LOC_Os05g16230OsAffx.14726.1.S1_at11/115+9158480..9159589expressed protein
LOC_Os05g16240OsAffx.14727.1.S1_at11/115+9163257..9164510expressed protein
LOC_Os05g16250Os.54392.1.S1_at11/115+9167672..9171691expressed protein
LOC_Os05g16260OsAffx.14839.1.S1_at1/115+9182002..9185142hypothetical protein
LOC_Os05g16260Os.31845.1.S1_x_at1/115+9182002..9185142hypothetical protein
LOC_Os05g16270Os.45161.1.A1_x_at2/115+9186285..9192025retrotransposon protein, putative, unclassified
LOC_Os05g16270OsAffx.22699.1.S1_x_at1/115+9186285..9192025retrotransposon protein, putative, unclassified
LOC_Os05g16280OsAffx.4358.1.S1_at11/115+9196315..9202245transposon protein, putative, unclassified, expressed

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Gene Ontology Classification
GO idTypeName
NONENONENONE
Probe Info
Probe NameHit(s)LocationSequenceTIGR Locus
Os.54392.1.S1_at--437--2251Chr05:9169647..9169671 (25 bp)
AAATTAGCGCAGTCCGTTTCTCGAA
LOC_Os05g16250
Os.54392.1.S1_at--80--891Chr05:9170054..9170078 (25 bp)
AGGCCATTCGTGCTCTTATATCAAG
LOC_Os05g16250
Os.54392.1.S1_at--440--6071Chr05:9170088..9170424 (25 bp)
GAGTTTATCTTATACAGGCCCTACC
LOC_Os05g16250
Os.54392.1.S1_at--104--871Chr05:9170415..9170439 (25 bp)
AGGCCCTACCAAGCTGTTTGTTCTA
LOC_Os05g16250
Os.54392.1.S1_at--455--6731Chr05:9170434..9170458 (25 bp)
GTTCTAGTCAGATGTCCCTGTACAT
LOC_Os05g16250
Os.54392.1.S1_at--584--11Chr05:9170457..9170481 (25 bp)
ATTGAACTTACCACTGGACTTCCTG
LOC_Os05g16250
Os.54392.1.S1_at--1025--8111Chr05:9170472..9170496 (25 bp)
GGACTTCCTGCCGAAACGTGATTTT
LOC_Os05g16250
Os.54392.1.S1_at--1031--6631Chr05:9170618..9170642 (25 bp)
GTTGTACCCCTCCAGATGTGTATAA
LOC_Os05g16250
Os.54392.1.S1_at--756--1931Chr05:9171528..9171552 (25 bp)
ACGGCATTCCGCGAAGGATCATCAT
LOC_Os05g16250
Os.54392.1.S1_at--202--10131Chr05:9171582..9171606 (25 bp)
TATGAAGTTCAGTTCGCTCCATTGC
LOC_Os05g16250
Os.54392.1.S1_at--914--51Chr05:9171667..9171691 (25 bp)
ATTGAATCTCCACACCATTTTACTT
LOC_Os05g16250
Target Sequence 
AAATTAGCGCAGTCCGTTTCTCGAAAGGCCATTCGTGCTCTTATATCAAGTGGTGCAGGGAGTTTATCTTATACAGGCCC
TACCAAGCTGTTTGTTCTAGTCAGATGTCCCTGTACATTGAACTTACCACTGGACTTCCTGCCGAAACGTGATTTTCGTT
ACAGCAAAAAGGTTGTACCCCTCCAGATGTGTATAAAATGCAATATAGCAGGCATCCAAATAGATAATCAACAAATAACA
TCAATTGTTGATGCTTCAAGATGCACTTCAGAATCTACTATTTCTGAGGTTATCTGGTTCCAGTGTAAGCATACGATAAG
AGGCCTACCTTGCAAGGCGTCATTAGAAGAGTGATATGGCCCAAGCATGTTGAAGACGCCCAGAAAACAGTGGATGATGT
AGCGATATAACTCCTGTTCTGACTTTGTAAATGCATACGGCATTCCGCGAAGGATCATCATTCTGTATGTTCGTTCCATT
TGTACAGTGCTATGAAGTTCAGTTCGCTCCATTGCCTAACAAAGAAGAATGAAAAACAAGAGCACAATTAAAGTTTAGTG
AACCTGAAGTATTGAATTGAATCTCCACACCATTTTACTT

BLASTn GenBank NR

Expression Profiles Gene Chronologer
Gene Chronologer (Grouped)
Heterosis View
Gene Correlator (coexpression analysis)
SALK RiceGE
Rice MPSS  MPSS logo
RiceArray Coexpression Database
Miscellaneous SNP data between Minghui 63 and Zhenshan 97 from OryzaSNP project:
extend bp around Os.54392.1.S1_at     

Putative homologies in rice

Putative homologies in arabidopsis